Mercurial > repos > devteam > kraken_translate
diff tool-data/kraken_databases.loc.sample @ 4:9a5be5b1a5c9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
| author | iuc |
|---|---|
| date | Wed, 04 Dec 2019 06:51:08 -0500 |
| parents | 77ca66b1f5e9 |
| children |
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--- a/tool-data/kraken_databases.loc.sample Mon Aug 07 17:29:45 2017 -0400 +++ b/tool-data/kraken_databases.loc.sample Wed Dec 04 06:51:08 2019 -0500 @@ -0,0 +1,18 @@ +# Expect three columns, tab separated, as follows: +# - value (Galaxy records this in the Galaxy DB) +# - name (Galaxy shows this in the UI) +# - path (folder name containing the Kraken DB) +# +# e.g. +# plants2018<tab>Plant genomes (2018)<tab>/path/to/krakenDB/plants_2018 +# +# For backward compatibility the Kraken wrapper also accepts: +# - value (Galaxy records this in the Galaxy DB) +# - name (Final part of folder name, Galaxy shows this in the UI) +# - path (Parent folder name, where $path/$name contains the Kraken DB) +# +# e.g. +# plants2018<tab>plants_2018<tab>/path/to/krakenDB +# +# Please avoid this legacy usage, as not all tools using +# the kraken_databases.loc file will understand it.