Mercurial > repos > devteam > kraken_translate
comparison tool-data/kraken_databases.loc.sample @ 4:9a5be5b1a5c9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
| author | iuc |
|---|---|
| date | Wed, 04 Dec 2019 06:51:08 -0500 |
| parents | 77ca66b1f5e9 |
| children |
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| 3:9bdcba262627 | 4:9a5be5b1a5c9 |
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| 1 # Expect three columns, tab separated, as follows: | |
| 2 # - value (Galaxy records this in the Galaxy DB) | |
| 3 # - name (Galaxy shows this in the UI) | |
| 4 # - path (folder name containing the Kraken DB) | |
| 5 # | |
| 6 # e.g. | |
| 7 # plants2018<tab>Plant genomes (2018)<tab>/path/to/krakenDB/plants_2018 | |
| 8 # | |
| 9 # For backward compatibility the Kraken wrapper also accepts: | |
| 10 # - value (Galaxy records this in the Galaxy DB) | |
| 11 # - name (Final part of folder name, Galaxy shows this in the UI) | |
| 12 # - path (Parent folder name, where $path/$name contains the Kraken DB) | |
| 13 # | |
| 14 # e.g. | |
| 15 # plants2018<tab>plants_2018<tab>/path/to/krakenDB | |
| 16 # | |
| 17 # Please avoid this legacy usage, as not all tools using | |
| 18 # the kraken_databases.loc file will understand it. |