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view test-data/lastz_d_test1.out @ 12:48d39ee9eb30 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lastz commit 2f47e1d9794907e95166dbd039f54139d5ca5595
author iuc
date Thu, 22 Jan 2026 18:28:16 +0000
parents bd84ff27bc16
children
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# (a LASTZ scoring set, created by "LASTZ --infer")

bad_score          = X:-1764 # used for sub[X][*] and sub[*][X]
fill_score         = -176    # used when sub[*][*] not otherwise defined
gap_open_penalty   = 573
gap_extend_penalty = 43

      A     C     G     T
A    73   -83   -52  -100
C   -83   100  -176   -52
G   -52  -176   100   -83
T  -100   -52   -83    73