Mercurial > repos > devteam > lastz
changeset 12:48d39ee9eb30 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lastz commit 2f47e1d9794907e95166dbd039f54139d5ca5595
| author | iuc |
|---|---|
| date | Thu, 22 Jan 2026 18:28:16 +0000 |
| parents | 37b497aa133f |
| children | |
| files | lastz.xml |
| diffstat | 1 files changed, 7 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- a/lastz.xml Sun Jul 02 12:10:46 2023 +0000 +++ b/lastz.xml Thu Jan 22 18:28:16 2026 +0000 @@ -259,6 +259,8 @@ '--format=${output_format.out.maf_type}' #elif str( $output_format.out.format ) == "blastn": --format=BLASTN- + #elif str( $output_format.out.format ) == "paf": + --format=PAF- #elif str( $output_format.out.format ) == "general_full": '--format=general-:${output_format.out.fields}' #elif str( $output_format.out.format ) == "differences": @@ -500,6 +502,7 @@ <option value="general_full">Customized general (--format=general[:fields])</option> <option value="maf">MAF (--format=maf)</option> <option value="blastn">blastn (--format=BLASTN)</option> + <option value="paf">paf (--format=PAF)</option> <option value="differences">Differences (--format=differences)</option> </param> <when value="bam"> @@ -576,6 +579,9 @@ <when value="blastn"> <!-- Do nothing --> </when> + <when value="paf"> + <!-- Do nothing --> + </when> <when value="differences"> <!-- Do nothing --> </when> @@ -586,6 +592,7 @@ <outputs> <data format="tabular" name="output" label="${tool.name} on ${on_string}: mapped reads"> <change_format> + <when input="output_format.out.format" value="paf" format="paf" /> <when input="output_format.out.format" value="bam" format="bam" /> <when input="output_format.out.format" value="maf" format="maf" /> <when input="output_format.out.format" value="differences" format="interval" />