changeset 3:d054d95585b1 draft

Uploaded a tool dependency definition that defines a complex repository dependency on package_lastz_1_02_00.
author devteam
date Fri, 21 Feb 2014 14:25:04 -0500
parents 12d4359b7e2f
children 60afcc2c1d05
files tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 21 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Apr 01 15:24:44 2013 -0400
+++ b/tool_dependencies.xml	Fri Feb 21 14:25:04 2014 -0500
@@ -1,26 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="lastz" version="1.02.00">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url" target_filename="lastz-distrib-1.02.00.tar.gz">http://www.bx.psu.edu/miller_lab/dist/lastz-1.02.00.tar.gz</action>
-                <action type="shell_command">make</action>
-                <action type="move_file">
-                    <source>src/lastz</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="move_file">
-                    <source>src/lastz_D</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454.
-        </readme>
+        <repository changeset_revision="1d4a5e764543" name="package_lastz_1_02_00" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>
-