Mercurial > repos > devteam > lda_analysis
view r_wrapper.sh @ 0:f38763b52f33 draft
Imported from capsule None
author | devteam |
---|---|
date | Mon, 28 Jul 2014 11:56:39 -0400 |
parents | |
children |
line wrap: on
line source
#!/bin/sh ### Run R providing the R script in $1 as standard input and passing ### the remaining arguments on the command line # Function that writes a message to stderr and exits fail() { echo "$@" >&2 exit 1 } # Ensure R executable is found which R > /dev/null || fail "'R' is required by this tool but was not found on path" # Extract first argument infile=$1; shift # Ensure the file exists test -f $infile || fail "R input file '$infile' does not exist" # Invoke R passing file named by first argument to stdin R --vanilla --slave $* < $infile