Mercurial > repos > devteam > lda_analysis
view r_wrapper.sh @ 1:f0b6217f4a0c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/lda_analysis commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author | devteam |
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date | Wed, 11 Nov 2015 12:18:38 -0500 |
parents | f38763b52f33 |
children |
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#!/bin/sh ### Run R providing the R script in $1 as standard input and passing ### the remaining arguments on the command line # Function that writes a message to stderr and exits fail() { echo "$@" >&2 exit 1 } # Ensure R executable is found which R > /dev/null || fail "'R' is required by this tool but was not found on path" # Extract first argument infile=$1; shift # Ensure the file exists test -f $infile || fail "R input file '$infile' does not exist" # Invoke R passing file named by first argument to stdin R --vanilla --slave $* < $infile