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1 <?xml version="1.0"?>
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd">
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3 <BlastOutput>
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4 <BlastOutput_program>blastx</BlastOutput_program>
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5 <BlastOutput_version>BLASTX 2.2.25+</BlastOutput_version>
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6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
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7 <BlastOutput_db></BlastOutput_db>
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8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
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9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def>
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10 <BlastOutput_query-len>1047</BlastOutput_query-len>
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11 <BlastOutput_param>
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12 <Parameters>
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13 <Parameters_matrix>BLOSUM62</Parameters_matrix>
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14 <Parameters_expect>1e-10</Parameters_expect>
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15 <Parameters_gap-open>11</Parameters_gap-open>
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16 <Parameters_gap-extend>1</Parameters_gap-extend>
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17 <Parameters_filter>L;</Parameters_filter>
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18 </Parameters>
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19 </BlastOutput_param>
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20 <BlastOutput_iterations>
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21 <Iteration>
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22 <Iteration_iter-num>1</Iteration_iter-num>
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23 <Iteration_query-ID>Query_1</Iteration_query-ID>
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24 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
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25 <Iteration_query-len>1047</Iteration_query-len>
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26 <Iteration_hits></Iteration_hits>
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27 <Iteration_stat>
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28 <Statistics>
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29 <Statistics_db-num>0</Statistics_db-num>
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30 <Statistics_db-len>0</Statistics_db-len>
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31 <Statistics_hsp-len>29</Statistics_hsp-len>
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32 <Statistics_eff-space>102080</Statistics_eff-space>
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33 <Statistics_kappa>0.041</Statistics_kappa>
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34 <Statistics_lambda>0.267</Statistics_lambda>
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35 <Statistics_entropy>0.14</Statistics_entropy>
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36 </Statistics>
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37 </Iteration_stat>
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38 <Iteration_message>No hits found</Iteration_message>
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39 </Iteration>
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40 <Iteration>
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41 <Iteration_iter-num>2</Iteration_iter-num>
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42 <Iteration_query-ID>Query_1</Iteration_query-ID>
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43 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
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44 <Iteration_query-len>1047</Iteration_query-len>
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45 <Iteration_hits></Iteration_hits>
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46 <Iteration_stat>
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47 <Statistics>
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48 <Statistics_db-num>0</Statistics_db-num>
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49 <Statistics_db-len>0</Statistics_db-len>
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50 <Statistics_hsp-len>29</Statistics_hsp-len>
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51 <Statistics_eff-space>102080</Statistics_eff-space>
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52 <Statistics_kappa>0.041</Statistics_kappa>
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53 <Statistics_lambda>0.267</Statistics_lambda>
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54 <Statistics_entropy>0.14</Statistics_entropy>
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55 </Statistics>
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56 </Iteration_stat>
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57 <Iteration_message>No hits found</Iteration_message>
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58 </Iteration>
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59 <Iteration>
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60 <Iteration_iter-num>3</Iteration_iter-num>
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61 <Iteration_query-ID>Query_1</Iteration_query-ID>
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62 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
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63 <Iteration_query-len>1047</Iteration_query-len>
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64 <Iteration_hits></Iteration_hits>
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65 <Iteration_stat>
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66 <Statistics>
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67 <Statistics_db-num>0</Statistics_db-num>
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68 <Statistics_db-len>0</Statistics_db-len>
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69 <Statistics_hsp-len>29</Statistics_hsp-len>
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70 <Statistics_eff-space>102080</Statistics_eff-space>
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71 <Statistics_kappa>0.041</Statistics_kappa>
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72 <Statistics_lambda>0.267</Statistics_lambda>
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73 <Statistics_entropy>0.14</Statistics_entropy>
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74 </Statistics>
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75 </Iteration_stat>
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76 <Iteration_message>No hits found</Iteration_message>
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77 </Iteration>
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78 <Iteration>
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79 <Iteration_iter-num>4</Iteration_iter-num>
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80 <Iteration_query-ID>Query_1</Iteration_query-ID>
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81 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
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82 <Iteration_query-len>1047</Iteration_query-len>
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83 <Iteration_hits>
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84 <Hit>
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85 <Hit_num>1</Hit_num>
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86 <Hit_id>Subject_4</Hit_id>
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87 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
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88 <Hit_accession>Subject_4</Hit_accession>
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89 <Hit_len>348</Hit_len>
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90 <Hit_hsps>
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91 <Hsp>
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92 <Hsp_num>1</Hsp_num>
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93 <Hsp_bit-score>662.143908370966</Hsp_bit-score>
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94 <Hsp_score>1707</Hsp_score>
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95 <Hsp_evalue>0</Hsp_evalue>
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96 <Hsp_query-from>1</Hsp_query-from>
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97 <Hsp_query-to>1044</Hsp_query-to>
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98 <Hsp_hit-from>1</Hsp_hit-from>
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99 <Hsp_hit-to>348</Hsp_hit-to>
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100 <Hsp_query-frame>1</Hsp_query-frame>
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101 <Hsp_hit-frame>0</Hsp_hit-frame>
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102 <Hsp_identity>336</Hsp_identity>
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103 <Hsp_positive>343</Hsp_positive>
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104 <Hsp_gaps>0</Hsp_gaps>
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105 <Hsp_align-len>348</Hsp_align-len>
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106 <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_qseq>
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107 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq>
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108 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline>
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109 </Hsp>
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110 </Hit_hsps>
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111 </Hit>
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112 </Iteration_hits>
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113 <Iteration_stat>
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114 <Statistics>
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115 <Statistics_db-num>0</Statistics_db-num>
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116 <Statistics_db-len>0</Statistics_db-len>
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117 <Statistics_hsp-len>29</Statistics_hsp-len>
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118 <Statistics_eff-space>102080</Statistics_eff-space>
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119 <Statistics_kappa>0.041</Statistics_kappa>
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120 <Statistics_lambda>0.267</Statistics_lambda>
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121 <Statistics_entropy>0.14</Statistics_entropy>
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122 </Statistics>
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123 </Iteration_stat>
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124 </Iteration>
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125 <Iteration>
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126 <Iteration_iter-num>5</Iteration_iter-num>
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127 <Iteration_query-ID>Query_2</Iteration_query-ID>
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128 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
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129 <Iteration_query-len>1574</Iteration_query-len>
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130 <Iteration_hits></Iteration_hits>
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131 <Iteration_stat>
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132 <Statistics>
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133 <Statistics_db-num>0</Statistics_db-num>
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134 <Statistics_db-len>0</Statistics_db-len>
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135 <Statistics_hsp-len>32</Statistics_hsp-len>
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136 <Statistics_eff-space>155472</Statistics_eff-space>
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137 <Statistics_kappa>0.041</Statistics_kappa>
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138 <Statistics_lambda>0.267</Statistics_lambda>
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139 <Statistics_entropy>0.14</Statistics_entropy>
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140 </Statistics>
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141 </Iteration_stat>
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142 <Iteration_message>No hits found</Iteration_message>
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143 </Iteration>
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144 <Iteration>
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145 <Iteration_iter-num>6</Iteration_iter-num>
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146 <Iteration_query-ID>Query_2</Iteration_query-ID>
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147 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
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148 <Iteration_query-len>1574</Iteration_query-len>
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149 <Iteration_hits></Iteration_hits>
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150 <Iteration_stat>
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151 <Statistics>
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152 <Statistics_db-num>0</Statistics_db-num>
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153 <Statistics_db-len>0</Statistics_db-len>
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154 <Statistics_hsp-len>32</Statistics_hsp-len>
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155 <Statistics_eff-space>155472</Statistics_eff-space>
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156 <Statistics_kappa>0.041</Statistics_kappa>
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157 <Statistics_lambda>0.267</Statistics_lambda>
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158 <Statistics_entropy>0.14</Statistics_entropy>
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159 </Statistics>
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160 </Iteration_stat>
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161 <Iteration_message>No hits found</Iteration_message>
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162 </Iteration>
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163 <Iteration>
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164 <Iteration_iter-num>7</Iteration_iter-num>
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165 <Iteration_query-ID>Query_2</Iteration_query-ID>
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166 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
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167 <Iteration_query-len>1574</Iteration_query-len>
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168 <Iteration_hits></Iteration_hits>
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169 <Iteration_stat>
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170 <Statistics>
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171 <Statistics_db-num>0</Statistics_db-num>
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172 <Statistics_db-len>0</Statistics_db-len>
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173 <Statistics_hsp-len>32</Statistics_hsp-len>
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174 <Statistics_eff-space>155472</Statistics_eff-space>
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175 <Statistics_kappa>0.041</Statistics_kappa>
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176 <Statistics_lambda>0.267</Statistics_lambda>
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177 <Statistics_entropy>0.14</Statistics_entropy>
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178 </Statistics>
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179 </Iteration_stat>
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180 <Iteration_message>No hits found</Iteration_message>
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181 </Iteration>
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182 <Iteration>
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183 <Iteration_iter-num>8</Iteration_iter-num>
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184 <Iteration_query-ID>Query_2</Iteration_query-ID>
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185 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
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186 <Iteration_query-len>1574</Iteration_query-len>
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187 <Iteration_hits>
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188 <Hit>
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189 <Hit_num>1</Hit_num>
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190 <Hit_id>Subject_4</Hit_id>
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191 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
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192 <Hit_accession>Subject_4</Hit_accession>
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193 <Hit_len>348</Hit_len>
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194 <Hit_hsps>
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195 <Hsp>
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196 <Hsp_num>1</Hsp_num>
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197 <Hsp_bit-score>575.088804213644</Hsp_bit-score>
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198 <Hsp_score>1481</Hsp_score>
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199 <Hsp_evalue>1.31349806431671e-168</Hsp_evalue>
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200 <Hsp_query-from>42</Hsp_query-from>
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201 <Hsp_query-to>1037</Hsp_query-to>
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202 <Hsp_hit-from>1</Hsp_hit-from>
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203 <Hsp_hit-to>332</Hsp_hit-to>
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204 <Hsp_query-frame>3</Hsp_query-frame>
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205 <Hsp_hit-frame>0</Hsp_hit-frame>
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206 <Hsp_identity>283</Hsp_identity>
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207 <Hsp_positive>315</Hsp_positive>
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208 <Hsp_gaps>0</Hsp_gaps>
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209 <Hsp_align-len>332</Hsp_align-len>
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210 <Hsp_qseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD</Hsp_qseq>
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211 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq>
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212 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+</Hsp_midline>
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213 </Hsp>
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214 </Hit_hsps>
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215 </Hit>
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216 </Iteration_hits>
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217 <Iteration_stat>
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218 <Statistics>
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219 <Statistics_db-num>0</Statistics_db-num>
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220 <Statistics_db-len>0</Statistics_db-len>
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221 <Statistics_hsp-len>32</Statistics_hsp-len>
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222 <Statistics_eff-space>155472</Statistics_eff-space>
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223 <Statistics_kappa>0.041</Statistics_kappa>
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224 <Statistics_lambda>0.267</Statistics_lambda>
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225 <Statistics_entropy>0.14</Statistics_entropy>
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226 </Statistics>
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227 </Iteration_stat>
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228 </Iteration>
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229 <Iteration>
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230 <Iteration_iter-num>9</Iteration_iter-num>
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231 <Iteration_query-ID>Query_3</Iteration_query-ID>
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232 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
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233 <Iteration_query-len>4301</Iteration_query-len>
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234 <Iteration_hits></Iteration_hits>
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235 <Iteration_stat>
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236 <Statistics>
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237 <Statistics_db-num>0</Statistics_db-num>
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238 <Statistics_db-len>0</Statistics_db-len>
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239 <Statistics_hsp-len>39</Statistics_hsp-len>
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240 <Statistics_eff-space>430746</Statistics_eff-space>
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241 <Statistics_kappa>0.041</Statistics_kappa>
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242 <Statistics_lambda>0.267</Statistics_lambda>
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243 <Statistics_entropy>0.14</Statistics_entropy>
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244 </Statistics>
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245 </Iteration_stat>
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246 <Iteration_message>No hits found</Iteration_message>
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247 </Iteration>
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248 <Iteration>
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249 <Iteration_iter-num>10</Iteration_iter-num>
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250 <Iteration_query-ID>Query_3</Iteration_query-ID>
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251 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
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252 <Iteration_query-len>4301</Iteration_query-len>
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253 <Iteration_hits></Iteration_hits>
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254 <Iteration_stat>
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255 <Statistics>
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256 <Statistics_db-num>0</Statistics_db-num>
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257 <Statistics_db-len>0</Statistics_db-len>
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258 <Statistics_hsp-len>39</Statistics_hsp-len>
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259 <Statistics_eff-space>430746</Statistics_eff-space>
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260 <Statistics_kappa>0.041</Statistics_kappa>
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261 <Statistics_lambda>0.267</Statistics_lambda>
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262 <Statistics_entropy>0.14</Statistics_entropy>
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263 </Statistics>
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264 </Iteration_stat>
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265 <Iteration_message>No hits found</Iteration_message>
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266 </Iteration>
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267 <Iteration>
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268 <Iteration_iter-num>11</Iteration_iter-num>
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269 <Iteration_query-ID>Query_3</Iteration_query-ID>
|
|
|
270 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
|
|
|
271 <Iteration_query-len>4301</Iteration_query-len>
|
|
|
272 <Iteration_hits></Iteration_hits>
|
|
|
273 <Iteration_stat>
|
|
|
274 <Statistics>
|
|
|
275 <Statistics_db-num>0</Statistics_db-num>
|
|
|
276 <Statistics_db-len>0</Statistics_db-len>
|
|
|
277 <Statistics_hsp-len>39</Statistics_hsp-len>
|
|
|
278 <Statistics_eff-space>430746</Statistics_eff-space>
|
|
|
279 <Statistics_kappa>0.041</Statistics_kappa>
|
|
|
280 <Statistics_lambda>0.267</Statistics_lambda>
|
|
|
281 <Statistics_entropy>0.14</Statistics_entropy>
|
|
|
282 </Statistics>
|
|
|
283 </Iteration_stat>
|
|
|
284 <Iteration_message>No hits found</Iteration_message>
|
|
|
285 </Iteration>
|
|
|
286 <Iteration>
|
|
|
287 <Iteration_iter-num>12</Iteration_iter-num>
|
|
|
288 <Iteration_query-ID>Query_3</Iteration_query-ID>
|
|
|
289 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
|
|
|
290 <Iteration_query-len>4301</Iteration_query-len>
|
|
|
291 <Iteration_hits>
|
|
|
292 <Hit>
|
|
|
293 <Hit_num>1</Hit_num>
|
|
|
294 <Hit_id>Subject_4</Hit_id>
|
|
|
295 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
|
|
|
296 <Hit_accession>Subject_4</Hit_accession>
|
|
|
297 <Hit_len>348</Hit_len>
|
|
|
298 <Hit_hsps>
|
|
|
299 <Hsp>
|
|
|
300 <Hsp_num>1</Hsp_num>
|
|
|
301 <Hsp_bit-score>224.171990552935</Hsp_bit-score>
|
|
|
302 <Hsp_score>570</Hsp_score>
|
|
|
303 <Hsp_evalue>1.57574304751949e-62</Hsp_evalue>
|
|
|
304 <Hsp_query-from>1</Hsp_query-from>
|
|
|
305 <Hsp_query-to>333</Hsp_query-to>
|
|
|
306 <Hsp_hit-from>11</Hsp_hit-from>
|
|
|
307 <Hsp_hit-to>121</Hsp_hit-to>
|
|
|
308 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
309 <Hsp_hit-frame>0</Hsp_hit-frame>
|
|
|
310 <Hsp_identity>107</Hsp_identity>
|
|
|
311 <Hsp_positive>109</Hsp_positive>
|
|
|
312 <Hsp_gaps>0</Hsp_gaps>
|
|
|
313 <Hsp_align-len>111</Hsp_align-len>
|
|
|
314 <Hsp_qseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq>
|
|
|
315 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq>
|
|
|
316 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline>
|
|
|
317 </Hsp>
|
|
|
318 <Hsp>
|
|
|
319 <Hsp_num>2</Hsp_num>
|
|
|
320 <Hsp_bit-score>129.412894877266</Hsp_bit-score>
|
|
|
321 <Hsp_score>324</Hsp_score>
|
|
|
322 <Hsp_evalue>5.28220874623366e-34</Hsp_evalue>
|
|
|
323 <Hsp_query-from>3174</Hsp_query-from>
|
|
|
324 <Hsp_query-to>3368</Hsp_query-to>
|
|
|
325 <Hsp_hit-from>248</Hsp_hit-from>
|
|
|
326 <Hsp_hit-to>312</Hsp_hit-to>
|
|
|
327 <Hsp_query-frame>3</Hsp_query-frame>
|
|
|
328 <Hsp_hit-frame>0</Hsp_hit-frame>
|
|
|
329 <Hsp_identity>60</Hsp_identity>
|
|
|
330 <Hsp_positive>64</Hsp_positive>
|
|
|
331 <Hsp_gaps>0</Hsp_gaps>
|
|
|
332 <Hsp_align-len>65</Hsp_align-len>
|
|
|
333 <Hsp_qseq>KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_qseq>
|
|
|
334 <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq>
|
|
|
335 <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline>
|
|
|
336 </Hsp>
|
|
|
337 <Hsp>
|
|
|
338 <Hsp_num>3</Hsp_num>
|
|
|
339 <Hsp_bit-score>120.938504207085</Hsp_bit-score>
|
|
|
340 <Hsp_score>302</Hsp_score>
|
|
|
341 <Hsp_evalue>1.87871691987854e-31</Hsp_evalue>
|
|
|
342 <Hsp_query-from>2855</Hsp_query-from>
|
|
|
343 <Hsp_query-to>3022</Hsp_query-to>
|
|
|
344 <Hsp_hit-from>177</Hsp_hit-from>
|
|
|
345 <Hsp_hit-to>232</Hsp_hit-to>
|
|
|
346 <Hsp_query-frame>2</Hsp_query-frame>
|
|
|
347 <Hsp_hit-frame>0</Hsp_hit-frame>
|
|
|
348 <Hsp_identity>54</Hsp_identity>
|
|
|
349 <Hsp_positive>56</Hsp_positive>
|
|
|
350 <Hsp_gaps>0</Hsp_gaps>
|
|
|
351 <Hsp_align-len>56</Hsp_align-len>
|
|
|
352 <Hsp_qseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKE</Hsp_qseq>
|
|
|
353 <Hsp_hseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKE</Hsp_hseq>
|
|
|
354 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE</Hsp_midline>
|
|
|
355 </Hsp>
|
|
|
356 <Hsp>
|
|
|
357 <Hsp_num>4</Hsp_num>
|
|
|
358 <Hsp_bit-score>118.242107175663</Hsp_bit-score>
|
|
|
359 <Hsp_score>295</Hsp_score>
|
|
|
360 <Hsp_evalue>1.21774886471054e-30</Hsp_evalue>
|
|
|
361 <Hsp_query-from>1404</Hsp_query-from>
|
|
|
362 <Hsp_query-to>1580</Hsp_query-to>
|
|
|
363 <Hsp_hit-from>119</Hsp_hit-from>
|
|
|
364 <Hsp_hit-to>177</Hsp_hit-to>
|
|
|
365 <Hsp_query-frame>3</Hsp_query-frame>
|
|
|
366 <Hsp_hit-frame>0</Hsp_hit-frame>
|
|
|
367 <Hsp_identity>55</Hsp_identity>
|
|
|
368 <Hsp_positive>56</Hsp_positive>
|
|
|
369 <Hsp_gaps>0</Hsp_gaps>
|
|
|
370 <Hsp_align-len>59</Hsp_align-len>
|
|
|
371 <Hsp_qseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_qseq>
|
|
|
372 <Hsp_hseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_hseq>
|
|
|
373 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline>
|
|
|
374 </Hsp>
|
|
|
375 <Hsp>
|
|
|
376 <Hsp_num>5</Hsp_num>
|
|
|
377 <Hsp_bit-score>56.2249754529693</Hsp_bit-score>
|
|
|
378 <Hsp_score>134</Hsp_score>
|
|
|
379 <Hsp_evalue>5.68296036241677e-12</Hsp_evalue>
|
|
|
380 <Hsp_query-from>4222</Hsp_query-from>
|
|
|
381 <Hsp_query-to>4296</Hsp_query-to>
|
|
|
382 <Hsp_hit-from>312</Hsp_hit-from>
|
|
|
383 <Hsp_hit-to>336</Hsp_hit-to>
|
|
|
384 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
385 <Hsp_hit-frame>0</Hsp_hit-frame>
|
|
|
386 <Hsp_identity>23</Hsp_identity>
|
|
|
387 <Hsp_positive>24</Hsp_positive>
|
|
|
388 <Hsp_gaps>0</Hsp_gaps>
|
|
|
389 <Hsp_align-len>25</Hsp_align-len>
|
|
|
390 <Hsp_qseq>QFRNCMLTTLCCGKNPLGDDEASTT</Hsp_qseq>
|
|
|
391 <Hsp_hseq>QFRNCMLTTICCGKNPLGDDEASAT</Hsp_hseq>
|
|
|
392 <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline>
|
|
|
393 </Hsp>
|
|
|
394 </Hit_hsps>
|
|
|
395 </Hit>
|
|
|
396 </Iteration_hits>
|
|
|
397 <Iteration_stat>
|
|
|
398 <Statistics>
|
|
|
399 <Statistics_db-num>0</Statistics_db-num>
|
|
|
400 <Statistics_db-len>0</Statistics_db-len>
|
|
|
401 <Statistics_hsp-len>39</Statistics_hsp-len>
|
|
|
402 <Statistics_eff-space>430746</Statistics_eff-space>
|
|
|
403 <Statistics_kappa>0.041</Statistics_kappa>
|
|
|
404 <Statistics_lambda>0.267</Statistics_lambda>
|
|
|
405 <Statistics_entropy>0.14</Statistics_entropy>
|
|
|
406 </Statistics>
|
|
|
407 </Iteration_stat>
|
|
|
408 </Iteration>
|
|
|
409 <Iteration>
|
|
|
410 <Iteration_iter-num>13</Iteration_iter-num>
|
|
|
411 <Iteration_query-ID>Query_4</Iteration_query-ID>
|
|
|
412 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
|
|
|
413 <Iteration_query-len>983</Iteration_query-len>
|
|
|
414 <Iteration_hits></Iteration_hits>
|
|
|
415 <Iteration_stat>
|
|
|
416 <Statistics>
|
|
|
417 <Statistics_db-num>0</Statistics_db-num>
|
|
|
418 <Statistics_db-len>0</Statistics_db-len>
|
|
|
419 <Statistics_hsp-len>28</Statistics_hsp-len>
|
|
|
420 <Statistics_eff-space>95680</Statistics_eff-space>
|
|
|
421 <Statistics_kappa>0.041</Statistics_kappa>
|
|
|
422 <Statistics_lambda>0.267</Statistics_lambda>
|
|
|
423 <Statistics_entropy>0.14</Statistics_entropy>
|
|
|
424 </Statistics>
|
|
|
425 </Iteration_stat>
|
|
|
426 <Iteration_message>No hits found</Iteration_message>
|
|
|
427 </Iteration>
|
|
|
428 <Iteration>
|
|
|
429 <Iteration_iter-num>14</Iteration_iter-num>
|
|
|
430 <Iteration_query-ID>Query_4</Iteration_query-ID>
|
|
|
431 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
|
|
|
432 <Iteration_query-len>983</Iteration_query-len>
|
|
|
433 <Iteration_hits></Iteration_hits>
|
|
|
434 <Iteration_stat>
|
|
|
435 <Statistics>
|
|
|
436 <Statistics_db-num>0</Statistics_db-num>
|
|
|
437 <Statistics_db-len>0</Statistics_db-len>
|
|
|
438 <Statistics_hsp-len>28</Statistics_hsp-len>
|
|
|
439 <Statistics_eff-space>95680</Statistics_eff-space>
|
|
|
440 <Statistics_kappa>0.041</Statistics_kappa>
|
|
|
441 <Statistics_lambda>0.267</Statistics_lambda>
|
|
|
442 <Statistics_entropy>0.14</Statistics_entropy>
|
|
|
443 </Statistics>
|
|
|
444 </Iteration_stat>
|
|
|
445 <Iteration_message>No hits found</Iteration_message>
|
|
|
446 </Iteration>
|
|
|
447 <Iteration>
|
|
|
448 <Iteration_iter-num>15</Iteration_iter-num>
|
|
|
449 <Iteration_query-ID>Query_4</Iteration_query-ID>
|
|
|
450 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
|
|
|
451 <Iteration_query-len>983</Iteration_query-len>
|
|
|
452 <Iteration_hits></Iteration_hits>
|
|
|
453 <Iteration_stat>
|
|
|
454 <Statistics>
|
|
|
455 <Statistics_db-num>0</Statistics_db-num>
|
|
|
456 <Statistics_db-len>0</Statistics_db-len>
|
|
|
457 <Statistics_hsp-len>28</Statistics_hsp-len>
|
|
|
458 <Statistics_eff-space>95680</Statistics_eff-space>
|
|
|
459 <Statistics_kappa>0.041</Statistics_kappa>
|
|
|
460 <Statistics_lambda>0.267</Statistics_lambda>
|
|
|
461 <Statistics_entropy>0.14</Statistics_entropy>
|
|
|
462 </Statistics>
|
|
|
463 </Iteration_stat>
|
|
|
464 <Iteration_message>No hits found</Iteration_message>
|
|
|
465 </Iteration>
|
|
|
466 <Iteration>
|
|
|
467 <Iteration_iter-num>16</Iteration_iter-num>
|
|
|
468 <Iteration_query-ID>Query_4</Iteration_query-ID>
|
|
|
469 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
|
|
|
470 <Iteration_query-len>983</Iteration_query-len>
|
|
|
471 <Iteration_hits>
|
|
|
472 <Hit>
|
|
|
473 <Hit_num>1</Hit_num>
|
|
|
474 <Hit_id>Subject_4</Hit_id>
|
|
|
475 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
|
|
|
476 <Hit_accession>Subject_4</Hit_accession>
|
|
|
477 <Hit_len>348</Hit_len>
|
|
|
478 <Hit_hsps>
|
|
|
479 <Hsp>
|
|
|
480 <Hsp_num>1</Hsp_num>
|
|
|
481 <Hsp_bit-score>613.993961381297</Hsp_bit-score>
|
|
|
482 <Hsp_score>1582</Hsp_score>
|
|
|
483 <Hsp_evalue>1.57028732393616e-180</Hsp_evalue>
|
|
|
484 <Hsp_query-from>1</Hsp_query-from>
|
|
|
485 <Hsp_query-to>978</Hsp_query-to>
|
|
|
486 <Hsp_hit-from>11</Hsp_hit-from>
|
|
|
487 <Hsp_hit-to>336</Hsp_hit-to>
|
|
|
488 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
489 <Hsp_hit-frame>0</Hsp_hit-frame>
|
|
|
490 <Hsp_identity>310</Hsp_identity>
|
|
|
491 <Hsp_positive>322</Hsp_positive>
|
|
|
492 <Hsp_gaps>0</Hsp_gaps>
|
|
|
493 <Hsp_align-len>326</Hsp_align-len>
|
|
|
494 <Hsp_qseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_qseq>
|
|
|
495 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_hseq>
|
|
|
496 <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline>
|
|
|
497 </Hsp>
|
|
|
498 </Hit_hsps>
|
|
|
499 </Hit>
|
|
|
500 </Iteration_hits>
|
|
|
501 <Iteration_stat>
|
|
|
502 <Statistics>
|
|
|
503 <Statistics_db-num>0</Statistics_db-num>
|
|
|
504 <Statistics_db-len>0</Statistics_db-len>
|
|
|
505 <Statistics_hsp-len>28</Statistics_hsp-len>
|
|
|
506 <Statistics_eff-space>95680</Statistics_eff-space>
|
|
|
507 <Statistics_kappa>0.041</Statistics_kappa>
|
|
|
508 <Statistics_lambda>0.267</Statistics_lambda>
|
|
|
509 <Statistics_entropy>0.14</Statistics_entropy>
|
|
|
510 </Statistics>
|
|
|
511 </Iteration_stat>
|
|
|
512 </Iteration>
|
|
|
513 <Iteration>
|
|
|
514 <Iteration_iter-num>17</Iteration_iter-num>
|
|
|
515 <Iteration_query-ID>Query_5</Iteration_query-ID>
|
|
|
516 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
|
|
|
517 <Iteration_query-len>1047</Iteration_query-len>
|
|
|
518 <Iteration_hits></Iteration_hits>
|
|
|
519 <Iteration_stat>
|
|
|
520 <Statistics>
|
|
|
521 <Statistics_db-num>0</Statistics_db-num>
|
|
|
522 <Statistics_db-len>0</Statistics_db-len>
|
|
|
523 <Statistics_hsp-len>29</Statistics_hsp-len>
|
|
|
524 <Statistics_eff-space>102080</Statistics_eff-space>
|
|
|
525 <Statistics_kappa>0.041</Statistics_kappa>
|
|
|
526 <Statistics_lambda>0.267</Statistics_lambda>
|
|
|
527 <Statistics_entropy>0.14</Statistics_entropy>
|
|
|
528 </Statistics>
|
|
|
529 </Iteration_stat>
|
|
|
530 <Iteration_message>No hits found</Iteration_message>
|
|
|
531 </Iteration>
|
|
|
532 <Iteration>
|
|
|
533 <Iteration_iter-num>18</Iteration_iter-num>
|
|
|
534 <Iteration_query-ID>Query_5</Iteration_query-ID>
|
|
|
535 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
|
|
|
536 <Iteration_query-len>1047</Iteration_query-len>
|
|
|
537 <Iteration_hits></Iteration_hits>
|
|
|
538 <Iteration_stat>
|
|
|
539 <Statistics>
|
|
|
540 <Statistics_db-num>0</Statistics_db-num>
|
|
|
541 <Statistics_db-len>0</Statistics_db-len>
|
|
|
542 <Statistics_hsp-len>29</Statistics_hsp-len>
|
|
|
543 <Statistics_eff-space>102080</Statistics_eff-space>
|
|
|
544 <Statistics_kappa>0.041</Statistics_kappa>
|
|
|
545 <Statistics_lambda>0.267</Statistics_lambda>
|
|
|
546 <Statistics_entropy>0.14</Statistics_entropy>
|
|
|
547 </Statistics>
|
|
|
548 </Iteration_stat>
|
|
|
549 <Iteration_message>No hits found</Iteration_message>
|
|
|
550 </Iteration>
|
|
|
551 <Iteration>
|
|
|
552 <Iteration_iter-num>19</Iteration_iter-num>
|
|
|
553 <Iteration_query-ID>Query_5</Iteration_query-ID>
|
|
|
554 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
|
|
|
555 <Iteration_query-len>1047</Iteration_query-len>
|
|
|
556 <Iteration_hits></Iteration_hits>
|
|
|
557 <Iteration_stat>
|
|
|
558 <Statistics>
|
|
|
559 <Statistics_db-num>0</Statistics_db-num>
|
|
|
560 <Statistics_db-len>0</Statistics_db-len>
|
|
|
561 <Statistics_hsp-len>29</Statistics_hsp-len>
|
|
|
562 <Statistics_eff-space>102080</Statistics_eff-space>
|
|
|
563 <Statistics_kappa>0.041</Statistics_kappa>
|
|
|
564 <Statistics_lambda>0.267</Statistics_lambda>
|
|
|
565 <Statistics_entropy>0.14</Statistics_entropy>
|
|
|
566 </Statistics>
|
|
|
567 </Iteration_stat>
|
|
|
568 <Iteration_message>No hits found</Iteration_message>
|
|
|
569 </Iteration>
|
|
|
570 <Iteration>
|
|
|
571 <Iteration_iter-num>20</Iteration_iter-num>
|
|
|
572 <Iteration_query-ID>Query_5</Iteration_query-ID>
|
|
|
573 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
|
|
|
574 <Iteration_query-len>1047</Iteration_query-len>
|
|
|
575 <Iteration_hits>
|
|
|
576 <Hit>
|
|
|
577 <Hit_num>1</Hit_num>
|
|
|
578 <Hit_id>Subject_4</Hit_id>
|
|
|
579 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
|
|
|
580 <Hit_accession>Subject_4</Hit_accession>
|
|
|
581 <Hit_len>348</Hit_len>
|
|
|
582 <Hit_hsps>
|
|
|
583 <Hsp>
|
|
|
584 <Hsp_num>1</Hsp_num>
|
|
|
585 <Hsp_bit-score>641.728330847346</Hsp_bit-score>
|
|
|
586 <Hsp_score>1654</Hsp_score>
|
|
|
587 <Hsp_evalue>0</Hsp_evalue>
|
|
|
588 <Hsp_query-from>1</Hsp_query-from>
|
|
|
589 <Hsp_query-to>1044</Hsp_query-to>
|
|
|
590 <Hsp_hit-from>1</Hsp_hit-from>
|
|
|
591 <Hsp_hit-to>348</Hsp_hit-to>
|
|
|
592 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
593 <Hsp_hit-frame>0</Hsp_hit-frame>
|
|
|
594 <Hsp_identity>325</Hsp_identity>
|
|
|
595 <Hsp_positive>337</Hsp_positive>
|
|
|
596 <Hsp_gaps>0</Hsp_gaps>
|
|
|
597 <Hsp_align-len>348</Hsp_align-len>
|
|
|
598 <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_qseq>
|
|
|
599 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq>
|
|
|
600 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline>
|
|
|
601 </Hsp>
|
|
|
602 </Hit_hsps>
|
|
|
603 </Hit>
|
|
|
604 </Iteration_hits>
|
|
|
605 <Iteration_stat>
|
|
|
606 <Statistics>
|
|
|
607 <Statistics_db-num>0</Statistics_db-num>
|
|
|
608 <Statistics_db-len>0</Statistics_db-len>
|
|
|
609 <Statistics_hsp-len>29</Statistics_hsp-len>
|
|
|
610 <Statistics_eff-space>102080</Statistics_eff-space>
|
|
|
611 <Statistics_kappa>0.041</Statistics_kappa>
|
|
|
612 <Statistics_lambda>0.267</Statistics_lambda>
|
|
|
613 <Statistics_entropy>0.14</Statistics_entropy>
|
|
|
614 </Statistics>
|
|
|
615 </Iteration_stat>
|
|
|
616 </Iteration>
|
|
|
617 <Iteration>
|
|
|
618 <Iteration_iter-num>21</Iteration_iter-num>
|
|
|
619 <Iteration_query-ID>Query_6</Iteration_query-ID>
|
|
|
620 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
|
|
|
621 <Iteration_query-len>1344</Iteration_query-len>
|
|
|
622 <Iteration_hits></Iteration_hits>
|
|
|
623 <Iteration_stat>
|
|
|
624 <Statistics>
|
|
|
625 <Statistics_db-num>0</Statistics_db-num>
|
|
|
626 <Statistics_db-len>0</Statistics_db-len>
|
|
|
627 <Statistics_hsp-len>31</Statistics_hsp-len>
|
|
|
628 <Statistics_eff-space>132189</Statistics_eff-space>
|
|
|
629 <Statistics_kappa>0.041</Statistics_kappa>
|
|
|
630 <Statistics_lambda>0.267</Statistics_lambda>
|
|
|
631 <Statistics_entropy>0.14</Statistics_entropy>
|
|
|
632 </Statistics>
|
|
|
633 </Iteration_stat>
|
|
|
634 <Iteration_message>No hits found</Iteration_message>
|
|
|
635 </Iteration>
|
|
|
636 <Iteration>
|
|
|
637 <Iteration_iter-num>22</Iteration_iter-num>
|
|
|
638 <Iteration_query-ID>Query_6</Iteration_query-ID>
|
|
|
639 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
|
|
|
640 <Iteration_query-len>1344</Iteration_query-len>
|
|
|
641 <Iteration_hits></Iteration_hits>
|
|
|
642 <Iteration_stat>
|
|
|
643 <Statistics>
|
|
|
644 <Statistics_db-num>0</Statistics_db-num>
|
|
|
645 <Statistics_db-len>0</Statistics_db-len>
|
|
|
646 <Statistics_hsp-len>31</Statistics_hsp-len>
|
|
|
647 <Statistics_eff-space>132189</Statistics_eff-space>
|
|
|
648 <Statistics_kappa>0.041</Statistics_kappa>
|
|
|
649 <Statistics_lambda>0.267</Statistics_lambda>
|
|
|
650 <Statistics_entropy>0.14</Statistics_entropy>
|
|
|
651 </Statistics>
|
|
|
652 </Iteration_stat>
|
|
|
653 <Iteration_message>No hits found</Iteration_message>
|
|
|
654 </Iteration>
|
|
|
655 <Iteration>
|
|
|
656 <Iteration_iter-num>23</Iteration_iter-num>
|
|
|
657 <Iteration_query-ID>Query_6</Iteration_query-ID>
|
|
|
658 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
|
|
|
659 <Iteration_query-len>1344</Iteration_query-len>
|
|
|
660 <Iteration_hits></Iteration_hits>
|
|
|
661 <Iteration_stat>
|
|
|
662 <Statistics>
|
|
|
663 <Statistics_db-num>0</Statistics_db-num>
|
|
|
664 <Statistics_db-len>0</Statistics_db-len>
|
|
|
665 <Statistics_hsp-len>31</Statistics_hsp-len>
|
|
|
666 <Statistics_eff-space>132189</Statistics_eff-space>
|
|
|
667 <Statistics_kappa>0.041</Statistics_kappa>
|
|
|
668 <Statistics_lambda>0.267</Statistics_lambda>
|
|
|
669 <Statistics_entropy>0.14</Statistics_entropy>
|
|
|
670 </Statistics>
|
|
|
671 </Iteration_stat>
|
|
|
672 <Iteration_message>No hits found</Iteration_message>
|
|
|
673 </Iteration>
|
|
|
674 <Iteration>
|
|
|
675 <Iteration_iter-num>24</Iteration_iter-num>
|
|
|
676 <Iteration_query-ID>Query_6</Iteration_query-ID>
|
|
|
677 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
|
|
|
678 <Iteration_query-len>1344</Iteration_query-len>
|
|
|
679 <Iteration_hits>
|
|
|
680 <Hit>
|
|
|
681 <Hit_num>1</Hit_num>
|
|
|
682 <Hit_id>Subject_4</Hit_id>
|
|
|
683 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
|
|
|
684 <Hit_accession>Subject_4</Hit_accession>
|
|
|
685 <Hit_len>348</Hit_len>
|
|
|
686 <Hit_hsps>
|
|
|
687 <Hsp>
|
|
|
688 <Hsp_num>1</Hsp_num>
|
|
|
689 <Hsp_bit-score>559.295621601033</Hsp_bit-score>
|
|
|
690 <Hsp_score>1440</Hsp_score>
|
|
|
691 <Hsp_evalue>6.32632556748138e-164</Hsp_evalue>
|
|
|
692 <Hsp_query-from>23</Hsp_query-from>
|
|
|
693 <Hsp_query-to>1018</Hsp_query-to>
|
|
|
694 <Hsp_hit-from>1</Hsp_hit-from>
|
|
|
695 <Hsp_hit-to>332</Hsp_hit-to>
|
|
|
696 <Hsp_query-frame>2</Hsp_query-frame>
|
|
|
697 <Hsp_hit-frame>0</Hsp_hit-frame>
|
|
|
698 <Hsp_identity>272</Hsp_identity>
|
|
|
699 <Hsp_positive>307</Hsp_positive>
|
|
|
700 <Hsp_gaps>0</Hsp_gaps>
|
|
|
701 <Hsp_align-len>332</Hsp_align-len>
|
|
|
702 <Hsp_qseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEED</Hsp_qseq>
|
|
|
703 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq>
|
|
|
704 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +++</Hsp_midline>
|
|
|
705 </Hsp>
|
|
|
706 </Hit_hsps>
|
|
|
707 </Hit>
|
|
|
708 </Iteration_hits>
|
|
|
709 <Iteration_stat>
|
|
|
710 <Statistics>
|
|
|
711 <Statistics_db-num>0</Statistics_db-num>
|
|
|
712 <Statistics_db-len>0</Statistics_db-len>
|
|
|
713 <Statistics_hsp-len>31</Statistics_hsp-len>
|
|
|
714 <Statistics_eff-space>132189</Statistics_eff-space>
|
|
|
715 <Statistics_kappa>0.041</Statistics_kappa>
|
|
|
716 <Statistics_lambda>0.267</Statistics_lambda>
|
|
|
717 <Statistics_entropy>0.14</Statistics_entropy>
|
|
|
718 </Statistics>
|
|
|
719 </Iteration_stat>
|
|
|
720 </Iteration>
|
|
|
721 </BlastOutput_iterations>
|
|
|
722 </BlastOutput>
|
