Mercurial > repos > devteam > ncbi_blast_plus
comparison test-data/blastp_four_human_vs_rhodopsin.xml @ 8:1f546099212f draft
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
author | peterjc |
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date | Tue, 19 Feb 2013 12:49:43 -0500 |
parents | d375502056f1 |
children | 4c4a0da938ff |
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7:4ce66a5401d0 | 8:1f546099212f |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd"> | 2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
3 <BlastOutput> | 3 <BlastOutput> |
4 <BlastOutput_program>blastp</BlastOutput_program> | 4 <BlastOutput_program>blastp</BlastOutput_program> |
5 <BlastOutput_version>BLASTP 2.2.25+</BlastOutput_version> | 5 <BlastOutput_version>BLASTP 2.2.26+</BlastOutput_version> |
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> | 6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> |
7 <BlastOutput_db></BlastOutput_db> | 7 <BlastOutput_db></BlastOutput_db> |
8 <BlastOutput_query-ID>sp|Q9BS26|ERP44_HUMAN</BlastOutput_query-ID> | 8 <BlastOutput_query-ID>sp|Q9BS26|ERP44_HUMAN</BlastOutput_query-ID> |
9 <BlastOutput_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def> | 9 <BlastOutput_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def> |
10 <BlastOutput_query-len>406</BlastOutput_query-len> | 10 <BlastOutput_query-len>406</BlastOutput_query-len> |
373 <Hit_accession>NP_001009242</Hit_accession> | 373 <Hit_accession>NP_001009242</Hit_accession> |
374 <Hit_len>348</Hit_len> | 374 <Hit_len>348</Hit_len> |
375 <Hit_hsps> | 375 <Hit_hsps> |
376 <Hsp> | 376 <Hsp> |
377 <Hsp_num>1</Hsp_num> | 377 <Hsp_num>1</Hsp_num> |
378 <Hsp_bit-score>701.049065538619</Hsp_bit-score> | 378 <Hsp_bit-score>701.049</Hsp_bit-score> |
379 <Hsp_score>1808</Hsp_score> | 379 <Hsp_score>1808</Hsp_score> |
380 <Hsp_evalue>0</Hsp_evalue> | 380 <Hsp_evalue>0</Hsp_evalue> |
381 <Hsp_query-from>1</Hsp_query-from> | 381 <Hsp_query-from>1</Hsp_query-from> |
382 <Hsp_query-to>348</Hsp_query-to> | 382 <Hsp_query-to>348</Hsp_query-to> |
383 <Hsp_hit-from>1</Hsp_hit-from> | 383 <Hsp_hit-from>1</Hsp_hit-from> |
420 <Hit_accession>P56514</Hit_accession> | 420 <Hit_accession>P56514</Hit_accession> |
421 <Hit_len>354</Hit_len> | 421 <Hit_len>354</Hit_len> |
422 <Hit_hsps> | 422 <Hit_hsps> |
423 <Hsp> | 423 <Hsp> |
424 <Hsp_num>1</Hsp_num> | 424 <Hsp_num>1</Hsp_num> |
425 <Hsp_bit-score>619.001555868222</Hsp_bit-score> | 425 <Hsp_bit-score>619.002</Hsp_bit-score> |
426 <Hsp_score>1595</Hsp_score> | 426 <Hsp_score>1595</Hsp_score> |
427 <Hsp_evalue>0</Hsp_evalue> | 427 <Hsp_evalue>0</Hsp_evalue> |
428 <Hsp_query-from>1</Hsp_query-from> | 428 <Hsp_query-from>1</Hsp_query-from> |
429 <Hsp_query-to>341</Hsp_query-to> | 429 <Hsp_query-to>341</Hsp_query-to> |
430 <Hsp_hit-from>1</Hsp_hit-from> | 430 <Hsp_hit-from>1</Hsp_hit-from> |
467 <Hit_accession>ADB45242</Hit_accession> | 467 <Hit_accession>ADB45242</Hit_accession> |
468 <Hit_len>328</Hit_len> | 468 <Hit_len>328</Hit_len> |
469 <Hit_hsps> | 469 <Hit_hsps> |
470 <Hsp> | 470 <Hsp> |
471 <Hsp_num>1</Hsp_num> | 471 <Hsp_num>1</Hsp_num> |
472 <Hsp_bit-score>653.284318124867</Hsp_bit-score> | 472 <Hsp_bit-score>653.284</Hsp_bit-score> |
473 <Hsp_score>1684</Hsp_score> | 473 <Hsp_score>1684</Hsp_score> |
474 <Hsp_evalue>0</Hsp_evalue> | 474 <Hsp_evalue>0</Hsp_evalue> |
475 <Hsp_query-from>11</Hsp_query-from> | 475 <Hsp_query-from>11</Hsp_query-from> |
476 <Hsp_query-to>338</Hsp_query-to> | 476 <Hsp_query-to>338</Hsp_query-to> |
477 <Hsp_hit-from>1</Hsp_hit-from> | 477 <Hsp_hit-from>1</Hsp_hit-from> |
514 <Hit_accession>ADB45229</Hit_accession> | 514 <Hit_accession>ADB45229</Hit_accession> |
515 <Hit_len>328</Hit_len> | 515 <Hit_len>328</Hit_len> |
516 <Hit_hsps> | 516 <Hit_hsps> |
517 <Hsp> | 517 <Hsp> |
518 <Hsp_num>1</Hsp_num> | 518 <Hsp_num>1</Hsp_num> |
519 <Hsp_bit-score>631.327942297578</Hsp_bit-score> | 519 <Hsp_bit-score>631.328</Hsp_bit-score> |
520 <Hsp_score>1627</Hsp_score> | 520 <Hsp_score>1627</Hsp_score> |
521 <Hsp_evalue>0</Hsp_evalue> | 521 <Hsp_evalue>0</Hsp_evalue> |
522 <Hsp_query-from>11</Hsp_query-from> | 522 <Hsp_query-from>11</Hsp_query-from> |
523 <Hsp_query-to>338</Hsp_query-to> | 523 <Hsp_query-to>338</Hsp_query-to> |
524 <Hsp_hit-from>1</Hsp_hit-from> | 524 <Hsp_hit-from>1</Hsp_hit-from> |
561 <Hit_accession>0811197A</Hit_accession> | 561 <Hit_accession>0811197A</Hit_accession> |
562 <Hit_len>347</Hit_len> | 562 <Hit_len>347</Hit_len> |
563 <Hit_hsps> | 563 <Hit_hsps> |
564 <Hsp> | 564 <Hsp> |
565 <Hsp_num>1</Hsp_num> | 565 <Hsp_num>1</Hsp_num> |
566 <Hsp_bit-score>673.314696072569</Hsp_bit-score> | 566 <Hsp_bit-score>673.315</Hsp_bit-score> |
567 <Hsp_score>1736</Hsp_score> | 567 <Hsp_score>1736</Hsp_score> |
568 <Hsp_evalue>0</Hsp_evalue> | 568 <Hsp_evalue>0</Hsp_evalue> |
569 <Hsp_query-from>1</Hsp_query-from> | 569 <Hsp_query-from>1</Hsp_query-from> |
570 <Hsp_query-to>348</Hsp_query-to> | 570 <Hsp_query-to>348</Hsp_query-to> |
571 <Hsp_hit-from>1</Hsp_hit-from> | 571 <Hsp_hit-from>1</Hsp_hit-from> |
608 <Hit_accession>BAB21486</Hit_accession> | 608 <Hit_accession>BAB21486</Hit_accession> |
609 <Hit_len>354</Hit_len> | 609 <Hit_len>354</Hit_len> |
610 <Hit_hsps> | 610 <Hit_hsps> |
611 <Hsp> | 611 <Hsp> |
612 <Hsp_num>1</Hsp_num> | 612 <Hsp_num>1</Hsp_num> |
613 <Hsp_bit-score>599.356377496438</Hsp_bit-score> | 613 <Hsp_bit-score>599.356</Hsp_bit-score> |
614 <Hsp_score>1544</Hsp_score> | 614 <Hsp_score>1544</Hsp_score> |
615 <Hsp_evalue>3.49521227372659e-176</Hsp_evalue> | 615 <Hsp_evalue>0</Hsp_evalue> |
616 <Hsp_query-from>1</Hsp_query-from> | 616 <Hsp_query-from>1</Hsp_query-from> |
617 <Hsp_query-to>341</Hsp_query-to> | 617 <Hsp_query-to>341</Hsp_query-to> |
618 <Hsp_hit-from>1</Hsp_hit-from> | 618 <Hsp_hit-from>1</Hsp_hit-from> |
619 <Hsp_hit-to>342</Hsp_hit-to> | 619 <Hsp_hit-to>342</Hsp_hit-to> |
620 <Hsp_query-frame>0</Hsp_query-frame> | 620 <Hsp_query-frame>0</Hsp_query-frame> |