Mercurial > repos > devteam > ncbi_blast_plus
annotate test-data/blastp_four_human_vs_rhodopsin.xml @ 8:1f546099212f draft
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
author | peterjc |
---|---|
date | Tue, 19 Feb 2013 12:49:43 -0500 |
parents | d375502056f1 |
children | 4c4a0da938ff |
rev | line source |
---|---|
0 | 1 <?xml version="1.0"?> |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
0 | 3 <BlastOutput> |
4 <BlastOutput_program>blastp</BlastOutput_program> | |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
5 <BlastOutput_version>BLASTP 2.2.26+</BlastOutput_version> |
0 | 6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> |
7 <BlastOutput_db></BlastOutput_db> | |
8 <BlastOutput_query-ID>sp|Q9BS26|ERP44_HUMAN</BlastOutput_query-ID> | |
9 <BlastOutput_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def> | |
10 <BlastOutput_query-len>406</BlastOutput_query-len> | |
11 <BlastOutput_param> | |
12 <Parameters> | |
13 <Parameters_matrix>BLOSUM62</Parameters_matrix> | |
14 <Parameters_expect>1e-08</Parameters_expect> | |
15 <Parameters_gap-open>11</Parameters_gap-open> | |
16 <Parameters_gap-extend>1</Parameters_gap-extend> | |
17 <Parameters_filter>F</Parameters_filter> | |
18 </Parameters> | |
19 </BlastOutput_param> | |
20 <BlastOutput_iterations> | |
21 <Iteration> | |
22 <Iteration_iter-num>1</Iteration_iter-num> | |
23 <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> | |
24 <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
25 <Iteration_query-len>406</Iteration_query-len> | |
26 <Iteration_hits></Iteration_hits> | |
27 <Iteration_stat> | |
28 <Statistics> | |
29 <Statistics_db-num>0</Statistics_db-num> | |
30 <Statistics_db-len>0</Statistics_db-len> | |
31 <Statistics_hsp-len>30</Statistics_hsp-len> | |
32 <Statistics_eff-space>119568</Statistics_eff-space> | |
33 <Statistics_kappa>0.041</Statistics_kappa> | |
34 <Statistics_lambda>0.267</Statistics_lambda> | |
35 <Statistics_entropy>0.14</Statistics_entropy> | |
36 </Statistics> | |
37 </Iteration_stat> | |
38 <Iteration_message>No hits found</Iteration_message> | |
39 </Iteration> | |
40 <Iteration> | |
41 <Iteration_iter-num>2</Iteration_iter-num> | |
42 <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> | |
43 <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
44 <Iteration_query-len>406</Iteration_query-len> | |
45 <Iteration_hits></Iteration_hits> | |
46 <Iteration_stat> | |
47 <Statistics> | |
48 <Statistics_db-num>0</Statistics_db-num> | |
49 <Statistics_db-len>0</Statistics_db-len> | |
50 <Statistics_hsp-len>30</Statistics_hsp-len> | |
51 <Statistics_eff-space>119568</Statistics_eff-space> | |
52 <Statistics_kappa>0.041</Statistics_kappa> | |
53 <Statistics_lambda>0.267</Statistics_lambda> | |
54 <Statistics_entropy>0.14</Statistics_entropy> | |
55 </Statistics> | |
56 </Iteration_stat> | |
57 <Iteration_message>No hits found</Iteration_message> | |
58 </Iteration> | |
59 <Iteration> | |
60 <Iteration_iter-num>3</Iteration_iter-num> | |
61 <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> | |
62 <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
63 <Iteration_query-len>406</Iteration_query-len> | |
64 <Iteration_hits></Iteration_hits> | |
65 <Iteration_stat> | |
66 <Statistics> | |
67 <Statistics_db-num>0</Statistics_db-num> | |
68 <Statistics_db-len>0</Statistics_db-len> | |
69 <Statistics_hsp-len>30</Statistics_hsp-len> | |
70 <Statistics_eff-space>119568</Statistics_eff-space> | |
71 <Statistics_kappa>0.041</Statistics_kappa> | |
72 <Statistics_lambda>0.267</Statistics_lambda> | |
73 <Statistics_entropy>0.14</Statistics_entropy> | |
74 </Statistics> | |
75 </Iteration_stat> | |
76 <Iteration_message>No hits found</Iteration_message> | |
77 </Iteration> | |
78 <Iteration> | |
79 <Iteration_iter-num>4</Iteration_iter-num> | |
80 <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> | |
81 <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
82 <Iteration_query-len>406</Iteration_query-len> | |
83 <Iteration_hits></Iteration_hits> | |
84 <Iteration_stat> | |
85 <Statistics> | |
86 <Statistics_db-num>0</Statistics_db-num> | |
87 <Statistics_db-len>0</Statistics_db-len> | |
88 <Statistics_hsp-len>30</Statistics_hsp-len> | |
89 <Statistics_eff-space>119568</Statistics_eff-space> | |
90 <Statistics_kappa>0.041</Statistics_kappa> | |
91 <Statistics_lambda>0.267</Statistics_lambda> | |
92 <Statistics_entropy>0.14</Statistics_entropy> | |
93 </Statistics> | |
94 </Iteration_stat> | |
95 <Iteration_message>No hits found</Iteration_message> | |
96 </Iteration> | |
97 <Iteration> | |
98 <Iteration_iter-num>5</Iteration_iter-num> | |
99 <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> | |
100 <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
101 <Iteration_query-len>406</Iteration_query-len> | |
102 <Iteration_hits></Iteration_hits> | |
103 <Iteration_stat> | |
104 <Statistics> | |
105 <Statistics_db-num>0</Statistics_db-num> | |
106 <Statistics_db-len>0</Statistics_db-len> | |
107 <Statistics_hsp-len>30</Statistics_hsp-len> | |
108 <Statistics_eff-space>119568</Statistics_eff-space> | |
109 <Statistics_kappa>0.041</Statistics_kappa> | |
110 <Statistics_lambda>0.267</Statistics_lambda> | |
111 <Statistics_entropy>0.14</Statistics_entropy> | |
112 </Statistics> | |
113 </Iteration_stat> | |
114 <Iteration_message>No hits found</Iteration_message> | |
115 </Iteration> | |
116 <Iteration> | |
117 <Iteration_iter-num>6</Iteration_iter-num> | |
118 <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> | |
119 <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
120 <Iteration_query-len>406</Iteration_query-len> | |
121 <Iteration_hits></Iteration_hits> | |
122 <Iteration_stat> | |
123 <Statistics> | |
124 <Statistics_db-num>0</Statistics_db-num> | |
125 <Statistics_db-len>0</Statistics_db-len> | |
126 <Statistics_hsp-len>30</Statistics_hsp-len> | |
127 <Statistics_eff-space>119568</Statistics_eff-space> | |
128 <Statistics_kappa>0.041</Statistics_kappa> | |
129 <Statistics_lambda>0.267</Statistics_lambda> | |
130 <Statistics_entropy>0.14</Statistics_entropy> | |
131 </Statistics> | |
132 </Iteration_stat> | |
133 <Iteration_message>No hits found</Iteration_message> | |
134 </Iteration> | |
135 <Iteration> | |
136 <Iteration_iter-num>7</Iteration_iter-num> | |
137 <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> | |
138 <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
139 <Iteration_query-len>1161</Iteration_query-len> | |
140 <Iteration_hits></Iteration_hits> | |
141 <Iteration_stat> | |
142 <Statistics> | |
143 <Statistics_db-num>0</Statistics_db-num> | |
144 <Statistics_db-len>0</Statistics_db-len> | |
145 <Statistics_hsp-len>38</Statistics_hsp-len> | |
146 <Statistics_eff-space>348130</Statistics_eff-space> | |
147 <Statistics_kappa>0.041</Statistics_kappa> | |
148 <Statistics_lambda>0.267</Statistics_lambda> | |
149 <Statistics_entropy>0.14</Statistics_entropy> | |
150 </Statistics> | |
151 </Iteration_stat> | |
152 <Iteration_message>No hits found</Iteration_message> | |
153 </Iteration> | |
154 <Iteration> | |
155 <Iteration_iter-num>8</Iteration_iter-num> | |
156 <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> | |
157 <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
158 <Iteration_query-len>1161</Iteration_query-len> | |
159 <Iteration_hits></Iteration_hits> | |
160 <Iteration_stat> | |
161 <Statistics> | |
162 <Statistics_db-num>0</Statistics_db-num> | |
163 <Statistics_db-len>0</Statistics_db-len> | |
164 <Statistics_hsp-len>38</Statistics_hsp-len> | |
165 <Statistics_eff-space>348130</Statistics_eff-space> | |
166 <Statistics_kappa>0.041</Statistics_kappa> | |
167 <Statistics_lambda>0.267</Statistics_lambda> | |
168 <Statistics_entropy>0.14</Statistics_entropy> | |
169 </Statistics> | |
170 </Iteration_stat> | |
171 <Iteration_message>No hits found</Iteration_message> | |
172 </Iteration> | |
173 <Iteration> | |
174 <Iteration_iter-num>9</Iteration_iter-num> | |
175 <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> | |
176 <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
177 <Iteration_query-len>1161</Iteration_query-len> | |
178 <Iteration_hits></Iteration_hits> | |
179 <Iteration_stat> | |
180 <Statistics> | |
181 <Statistics_db-num>0</Statistics_db-num> | |
182 <Statistics_db-len>0</Statistics_db-len> | |
183 <Statistics_hsp-len>38</Statistics_hsp-len> | |
184 <Statistics_eff-space>348130</Statistics_eff-space> | |
185 <Statistics_kappa>0.041</Statistics_kappa> | |
186 <Statistics_lambda>0.267</Statistics_lambda> | |
187 <Statistics_entropy>0.14</Statistics_entropy> | |
188 </Statistics> | |
189 </Iteration_stat> | |
190 <Iteration_message>No hits found</Iteration_message> | |
191 </Iteration> | |
192 <Iteration> | |
193 <Iteration_iter-num>10</Iteration_iter-num> | |
194 <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> | |
195 <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
196 <Iteration_query-len>1161</Iteration_query-len> | |
197 <Iteration_hits></Iteration_hits> | |
198 <Iteration_stat> | |
199 <Statistics> | |
200 <Statistics_db-num>0</Statistics_db-num> | |
201 <Statistics_db-len>0</Statistics_db-len> | |
202 <Statistics_hsp-len>38</Statistics_hsp-len> | |
203 <Statistics_eff-space>348130</Statistics_eff-space> | |
204 <Statistics_kappa>0.041</Statistics_kappa> | |
205 <Statistics_lambda>0.267</Statistics_lambda> | |
206 <Statistics_entropy>0.14</Statistics_entropy> | |
207 </Statistics> | |
208 </Iteration_stat> | |
209 <Iteration_message>No hits found</Iteration_message> | |
210 </Iteration> | |
211 <Iteration> | |
212 <Iteration_iter-num>11</Iteration_iter-num> | |
213 <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> | |
214 <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
215 <Iteration_query-len>1161</Iteration_query-len> | |
216 <Iteration_hits></Iteration_hits> | |
217 <Iteration_stat> | |
218 <Statistics> | |
219 <Statistics_db-num>0</Statistics_db-num> | |
220 <Statistics_db-len>0</Statistics_db-len> | |
221 <Statistics_hsp-len>38</Statistics_hsp-len> | |
222 <Statistics_eff-space>348130</Statistics_eff-space> | |
223 <Statistics_kappa>0.041</Statistics_kappa> | |
224 <Statistics_lambda>0.267</Statistics_lambda> | |
225 <Statistics_entropy>0.14</Statistics_entropy> | |
226 </Statistics> | |
227 </Iteration_stat> | |
228 <Iteration_message>No hits found</Iteration_message> | |
229 </Iteration> | |
230 <Iteration> | |
231 <Iteration_iter-num>12</Iteration_iter-num> | |
232 <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> | |
233 <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
234 <Iteration_query-len>1161</Iteration_query-len> | |
235 <Iteration_hits></Iteration_hits> | |
236 <Iteration_stat> | |
237 <Statistics> | |
238 <Statistics_db-num>0</Statistics_db-num> | |
239 <Statistics_db-len>0</Statistics_db-len> | |
240 <Statistics_hsp-len>38</Statistics_hsp-len> | |
241 <Statistics_eff-space>348130</Statistics_eff-space> | |
242 <Statistics_kappa>0.041</Statistics_kappa> | |
243 <Statistics_lambda>0.267</Statistics_lambda> | |
244 <Statistics_entropy>0.14</Statistics_entropy> | |
245 </Statistics> | |
246 </Iteration_stat> | |
247 <Iteration_message>No hits found</Iteration_message> | |
248 </Iteration> | |
249 <Iteration> | |
250 <Iteration_iter-num>13</Iteration_iter-num> | |
251 <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> | |
252 <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
253 <Iteration_query-len>1382</Iteration_query-len> | |
254 <Iteration_hits></Iteration_hits> | |
255 <Iteration_stat> | |
256 <Statistics> | |
257 <Statistics_db-num>0</Statistics_db-num> | |
258 <Statistics_db-len>0</Statistics_db-len> | |
259 <Statistics_hsp-len>39</Statistics_hsp-len> | |
260 <Statistics_eff-space>414987</Statistics_eff-space> | |
261 <Statistics_kappa>0.041</Statistics_kappa> | |
262 <Statistics_lambda>0.267</Statistics_lambda> | |
263 <Statistics_entropy>0.14</Statistics_entropy> | |
264 </Statistics> | |
265 </Iteration_stat> | |
266 <Iteration_message>No hits found</Iteration_message> | |
267 </Iteration> | |
268 <Iteration> | |
269 <Iteration_iter-num>14</Iteration_iter-num> | |
270 <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> | |
271 <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
272 <Iteration_query-len>1382</Iteration_query-len> | |
273 <Iteration_hits></Iteration_hits> | |
274 <Iteration_stat> | |
275 <Statistics> | |
276 <Statistics_db-num>0</Statistics_db-num> | |
277 <Statistics_db-len>0</Statistics_db-len> | |
278 <Statistics_hsp-len>39</Statistics_hsp-len> | |
279 <Statistics_eff-space>414987</Statistics_eff-space> | |
280 <Statistics_kappa>0.041</Statistics_kappa> | |
281 <Statistics_lambda>0.267</Statistics_lambda> | |
282 <Statistics_entropy>0.14</Statistics_entropy> | |
283 </Statistics> | |
284 </Iteration_stat> | |
285 <Iteration_message>No hits found</Iteration_message> | |
286 </Iteration> | |
287 <Iteration> | |
288 <Iteration_iter-num>15</Iteration_iter-num> | |
289 <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> | |
290 <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
291 <Iteration_query-len>1382</Iteration_query-len> | |
292 <Iteration_hits></Iteration_hits> | |
293 <Iteration_stat> | |
294 <Statistics> | |
295 <Statistics_db-num>0</Statistics_db-num> | |
296 <Statistics_db-len>0</Statistics_db-len> | |
297 <Statistics_hsp-len>39</Statistics_hsp-len> | |
298 <Statistics_eff-space>414987</Statistics_eff-space> | |
299 <Statistics_kappa>0.041</Statistics_kappa> | |
300 <Statistics_lambda>0.267</Statistics_lambda> | |
301 <Statistics_entropy>0.14</Statistics_entropy> | |
302 </Statistics> | |
303 </Iteration_stat> | |
304 <Iteration_message>No hits found</Iteration_message> | |
305 </Iteration> | |
306 <Iteration> | |
307 <Iteration_iter-num>16</Iteration_iter-num> | |
308 <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> | |
309 <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
310 <Iteration_query-len>1382</Iteration_query-len> | |
311 <Iteration_hits></Iteration_hits> | |
312 <Iteration_stat> | |
313 <Statistics> | |
314 <Statistics_db-num>0</Statistics_db-num> | |
315 <Statistics_db-len>0</Statistics_db-len> | |
316 <Statistics_hsp-len>39</Statistics_hsp-len> | |
317 <Statistics_eff-space>414987</Statistics_eff-space> | |
318 <Statistics_kappa>0.041</Statistics_kappa> | |
319 <Statistics_lambda>0.267</Statistics_lambda> | |
320 <Statistics_entropy>0.14</Statistics_entropy> | |
321 </Statistics> | |
322 </Iteration_stat> | |
323 <Iteration_message>No hits found</Iteration_message> | |
324 </Iteration> | |
325 <Iteration> | |
326 <Iteration_iter-num>17</Iteration_iter-num> | |
327 <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> | |
328 <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
329 <Iteration_query-len>1382</Iteration_query-len> | |
330 <Iteration_hits></Iteration_hits> | |
331 <Iteration_stat> | |
332 <Statistics> | |
333 <Statistics_db-num>0</Statistics_db-num> | |
334 <Statistics_db-len>0</Statistics_db-len> | |
335 <Statistics_hsp-len>39</Statistics_hsp-len> | |
336 <Statistics_eff-space>414987</Statistics_eff-space> | |
337 <Statistics_kappa>0.041</Statistics_kappa> | |
338 <Statistics_lambda>0.267</Statistics_lambda> | |
339 <Statistics_entropy>0.14</Statistics_entropy> | |
340 </Statistics> | |
341 </Iteration_stat> | |
342 <Iteration_message>No hits found</Iteration_message> | |
343 </Iteration> | |
344 <Iteration> | |
345 <Iteration_iter-num>18</Iteration_iter-num> | |
346 <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> | |
347 <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
348 <Iteration_query-len>1382</Iteration_query-len> | |
349 <Iteration_hits></Iteration_hits> | |
350 <Iteration_stat> | |
351 <Statistics> | |
352 <Statistics_db-num>0</Statistics_db-num> | |
353 <Statistics_db-len>0</Statistics_db-len> | |
354 <Statistics_hsp-len>39</Statistics_hsp-len> | |
355 <Statistics_eff-space>414987</Statistics_eff-space> | |
356 <Statistics_kappa>0.041</Statistics_kappa> | |
357 <Statistics_lambda>0.267</Statistics_lambda> | |
358 <Statistics_entropy>0.14</Statistics_entropy> | |
359 </Statistics> | |
360 </Iteration_stat> | |
361 <Iteration_message>No hits found</Iteration_message> | |
362 </Iteration> | |
363 <Iteration> | |
364 <Iteration_iter-num>19</Iteration_iter-num> | |
365 <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> | |
366 <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
367 <Iteration_query-len>348</Iteration_query-len> | |
368 <Iteration_hits> | |
369 <Hit> | |
370 <Hit_num>1</Hit_num> | |
371 <Hit_id>gi|57163783|ref|NP_001009242.1|</Hit_id> | |
372 <Hit_def>rhodopsin [Felis catus]</Hit_def> | |
373 <Hit_accession>NP_001009242</Hit_accession> | |
374 <Hit_len>348</Hit_len> | |
375 <Hit_hsps> | |
376 <Hsp> | |
377 <Hsp_num>1</Hsp_num> | |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
378 <Hsp_bit-score>701.049</Hsp_bit-score> |
0 | 379 <Hsp_score>1808</Hsp_score> |
380 <Hsp_evalue>0</Hsp_evalue> | |
381 <Hsp_query-from>1</Hsp_query-from> | |
382 <Hsp_query-to>348</Hsp_query-to> | |
383 <Hsp_hit-from>1</Hsp_hit-from> | |
384 <Hsp_hit-to>348</Hsp_hit-to> | |
385 <Hsp_query-frame>0</Hsp_query-frame> | |
386 <Hsp_hit-frame>0</Hsp_hit-frame> | |
387 <Hsp_identity>336</Hsp_identity> | |
388 <Hsp_positive>343</Hsp_positive> | |
389 <Hsp_gaps>0</Hsp_gaps> | |
390 <Hsp_align-len>348</Hsp_align-len> | |
391 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> | |
392 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_hseq> | |
393 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> | |
394 </Hsp> | |
395 </Hit_hsps> | |
396 </Hit> | |
397 </Iteration_hits> | |
398 <Iteration_stat> | |
399 <Statistics> | |
400 <Statistics_db-num>0</Statistics_db-num> | |
401 <Statistics_db-len>0</Statistics_db-len> | |
402 <Statistics_hsp-len>29</Statistics_hsp-len> | |
403 <Statistics_eff-space>101761</Statistics_eff-space> | |
404 <Statistics_kappa>0.041</Statistics_kappa> | |
405 <Statistics_lambda>0.267</Statistics_lambda> | |
406 <Statistics_entropy>0.14</Statistics_entropy> | |
407 </Statistics> | |
408 </Iteration_stat> | |
409 </Iteration> | |
410 <Iteration> | |
411 <Iteration_iter-num>20</Iteration_iter-num> | |
412 <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> | |
413 <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
414 <Iteration_query-len>348</Iteration_query-len> | |
415 <Iteration_hits> | |
416 <Hit> | |
417 <Hit_num>1</Hit_num> | |
418 <Hit_id>gi|3024260|sp|P56514.1|OPSD_BUFBU</Hit_id> | |
419 <Hit_def>RecName: Full=Rhodopsin</Hit_def> | |
420 <Hit_accession>P56514</Hit_accession> | |
421 <Hit_len>354</Hit_len> | |
422 <Hit_hsps> | |
423 <Hsp> | |
424 <Hsp_num>1</Hsp_num> | |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
425 <Hsp_bit-score>619.002</Hsp_bit-score> |
0 | 426 <Hsp_score>1595</Hsp_score> |
427 <Hsp_evalue>0</Hsp_evalue> | |
428 <Hsp_query-from>1</Hsp_query-from> | |
429 <Hsp_query-to>341</Hsp_query-to> | |
430 <Hsp_hit-from>1</Hsp_hit-from> | |
431 <Hsp_hit-to>342</Hsp_hit-to> | |
432 <Hsp_query-frame>0</Hsp_query-frame> | |
433 <Hsp_hit-frame>0</Hsp_hit-frame> | |
434 <Hsp_identity>290</Hsp_identity> | |
435 <Hsp_positive>322</Hsp_positive> | |
436 <Hsp_gaps>1</Hsp_gaps> | |
437 <Hsp_align-len>342</Hsp_align-len> | |
438 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq> | |
439 <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq> | |
440 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE</Hsp_midline> | |
441 </Hsp> | |
442 </Hit_hsps> | |
443 </Hit> | |
444 </Iteration_hits> | |
445 <Iteration_stat> | |
446 <Statistics> | |
447 <Statistics_db-num>0</Statistics_db-num> | |
448 <Statistics_db-len>0</Statistics_db-len> | |
449 <Statistics_hsp-len>29</Statistics_hsp-len> | |
450 <Statistics_eff-space>101761</Statistics_eff-space> | |
451 <Statistics_kappa>0.041</Statistics_kappa> | |
452 <Statistics_lambda>0.267</Statistics_lambda> | |
453 <Statistics_entropy>0.14</Statistics_entropy> | |
454 </Statistics> | |
455 </Iteration_stat> | |
456 </Iteration> | |
457 <Iteration> | |
458 <Iteration_iter-num>21</Iteration_iter-num> | |
459 <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> | |
460 <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
461 <Iteration_query-len>348</Iteration_query-len> | |
462 <Iteration_hits> | |
463 <Hit> | |
464 <Hit_num>1</Hit_num> | |
465 <Hit_id>gi|283855846|gb|ADB45242.1|</Hit_id> | |
466 <Hit_def>rhodopsin [Cynopterus brachyotis]</Hit_def> | |
467 <Hit_accession>ADB45242</Hit_accession> | |
468 <Hit_len>328</Hit_len> | |
469 <Hit_hsps> | |
470 <Hsp> | |
471 <Hsp_num>1</Hsp_num> | |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
472 <Hsp_bit-score>653.284</Hsp_bit-score> |
0 | 473 <Hsp_score>1684</Hsp_score> |
474 <Hsp_evalue>0</Hsp_evalue> | |
475 <Hsp_query-from>11</Hsp_query-from> | |
476 <Hsp_query-to>338</Hsp_query-to> | |
477 <Hsp_hit-from>1</Hsp_hit-from> | |
478 <Hsp_hit-to>328</Hsp_hit-to> | |
479 <Hsp_query-frame>0</Hsp_query-frame> | |
480 <Hsp_hit-frame>0</Hsp_hit-frame> | |
481 <Hsp_identity>311</Hsp_identity> | |
482 <Hsp_positive>321</Hsp_positive> | |
483 <Hsp_gaps>0</Hsp_gaps> | |
484 <Hsp_align-len>328</Hsp_align-len> | |
485 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS</Hsp_qseq> | |
486 <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS</Hsp_hseq> | |
487 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T S</Hsp_midline> | |
488 </Hsp> | |
489 </Hit_hsps> | |
490 </Hit> | |
491 </Iteration_hits> | |
492 <Iteration_stat> | |
493 <Statistics> | |
494 <Statistics_db-num>0</Statistics_db-num> | |
495 <Statistics_db-len>0</Statistics_db-len> | |
496 <Statistics_hsp-len>29</Statistics_hsp-len> | |
497 <Statistics_eff-space>101761</Statistics_eff-space> | |
498 <Statistics_kappa>0.041</Statistics_kappa> | |
499 <Statistics_lambda>0.267</Statistics_lambda> | |
500 <Statistics_entropy>0.14</Statistics_entropy> | |
501 </Statistics> | |
502 </Iteration_stat> | |
503 </Iteration> | |
504 <Iteration> | |
505 <Iteration_iter-num>22</Iteration_iter-num> | |
506 <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> | |
507 <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
508 <Iteration_query-len>348</Iteration_query-len> | |
509 <Iteration_hits> | |
510 <Hit> | |
511 <Hit_num>1</Hit_num> | |
512 <Hit_id>gi|283855823|gb|ADB45229.1|</Hit_id> | |
513 <Hit_def>rhodopsin [Myotis pilosus]</Hit_def> | |
514 <Hit_accession>ADB45229</Hit_accession> | |
515 <Hit_len>328</Hit_len> | |
516 <Hit_hsps> | |
517 <Hsp> | |
518 <Hsp_num>1</Hsp_num> | |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
519 <Hsp_bit-score>631.328</Hsp_bit-score> |
0 | 520 <Hsp_score>1627</Hsp_score> |
521 <Hsp_evalue>0</Hsp_evalue> | |
522 <Hsp_query-from>11</Hsp_query-from> | |
523 <Hsp_query-to>338</Hsp_query-to> | |
524 <Hsp_hit-from>1</Hsp_hit-from> | |
525 <Hsp_hit-to>328</Hsp_hit-to> | |
526 <Hsp_query-frame>0</Hsp_query-frame> | |
527 <Hsp_hit-frame>0</Hsp_hit-frame> | |
528 <Hsp_identity>311</Hsp_identity> | |
529 <Hsp_positive>323</Hsp_positive> | |
530 <Hsp_gaps>0</Hsp_gaps> | |
531 <Hsp_align-len>328</Hsp_align-len> | |
532 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS</Hsp_qseq> | |
533 <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS</Hsp_hseq> | |
534 <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T S</Hsp_midline> | |
535 </Hsp> | |
536 </Hit_hsps> | |
537 </Hit> | |
538 </Iteration_hits> | |
539 <Iteration_stat> | |
540 <Statistics> | |
541 <Statistics_db-num>0</Statistics_db-num> | |
542 <Statistics_db-len>0</Statistics_db-len> | |
543 <Statistics_hsp-len>29</Statistics_hsp-len> | |
544 <Statistics_eff-space>101761</Statistics_eff-space> | |
545 <Statistics_kappa>0.041</Statistics_kappa> | |
546 <Statistics_lambda>0.267</Statistics_lambda> | |
547 <Statistics_entropy>0.14</Statistics_entropy> | |
548 </Statistics> | |
549 </Iteration_stat> | |
550 </Iteration> | |
551 <Iteration> | |
552 <Iteration_iter-num>23</Iteration_iter-num> | |
553 <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> | |
554 <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
555 <Iteration_query-len>348</Iteration_query-len> | |
556 <Iteration_hits> | |
557 <Hit> | |
558 <Hit_num>1</Hit_num> | |
559 <Hit_id>gi|223523|prf||0811197A</Hit_id> | |
560 <Hit_def>rhodopsin [Bos taurus]</Hit_def> | |
561 <Hit_accession>0811197A</Hit_accession> | |
562 <Hit_len>347</Hit_len> | |
563 <Hit_hsps> | |
564 <Hsp> | |
565 <Hsp_num>1</Hsp_num> | |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
566 <Hsp_bit-score>673.315</Hsp_bit-score> |
0 | 567 <Hsp_score>1736</Hsp_score> |
568 <Hsp_evalue>0</Hsp_evalue> | |
569 <Hsp_query-from>1</Hsp_query-from> | |
570 <Hsp_query-to>348</Hsp_query-to> | |
571 <Hsp_hit-from>1</Hsp_hit-from> | |
572 <Hsp_hit-to>347</Hsp_hit-to> | |
573 <Hsp_query-frame>0</Hsp_query-frame> | |
574 <Hsp_hit-frame>0</Hsp_hit-frame> | |
575 <Hsp_identity>324</Hsp_identity> | |
576 <Hsp_positive>336</Hsp_positive> | |
577 <Hsp_gaps>1</Hsp_gaps> | |
578 <Hsp_align-len>348</Hsp_align-len> | |
579 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> | |
580 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq> | |
581 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGID YT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> | |
582 </Hsp> | |
583 </Hit_hsps> | |
584 </Hit> | |
585 </Iteration_hits> | |
586 <Iteration_stat> | |
587 <Statistics> | |
588 <Statistics_db-num>0</Statistics_db-num> | |
589 <Statistics_db-len>0</Statistics_db-len> | |
590 <Statistics_hsp-len>29</Statistics_hsp-len> | |
591 <Statistics_eff-space>101761</Statistics_eff-space> | |
592 <Statistics_kappa>0.041</Statistics_kappa> | |
593 <Statistics_lambda>0.267</Statistics_lambda> | |
594 <Statistics_entropy>0.14</Statistics_entropy> | |
595 </Statistics> | |
596 </Iteration_stat> | |
597 </Iteration> | |
598 <Iteration> | |
599 <Iteration_iter-num>24</Iteration_iter-num> | |
600 <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> | |
601 <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
602 <Iteration_query-len>348</Iteration_query-len> | |
603 <Iteration_hits> | |
604 <Hit> | |
605 <Hit_num>1</Hit_num> | |
606 <Hit_id>gi|12583665|dbj|BAB21486.1|</Hit_id> | |
607 <Hit_def>fresh water form rod opsin [Conger myriaster]</Hit_def> | |
608 <Hit_accession>BAB21486</Hit_accession> | |
609 <Hit_len>354</Hit_len> | |
610 <Hit_hsps> | |
611 <Hsp> | |
612 <Hsp_num>1</Hsp_num> | |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
613 <Hsp_bit-score>599.356</Hsp_bit-score> |
0 | 614 <Hsp_score>1544</Hsp_score> |
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
615 <Hsp_evalue>0</Hsp_evalue> |
0 | 616 <Hsp_query-from>1</Hsp_query-from> |
617 <Hsp_query-to>341</Hsp_query-to> | |
618 <Hsp_hit-from>1</Hsp_hit-from> | |
619 <Hsp_hit-to>342</Hsp_hit-to> | |
620 <Hsp_query-frame>0</Hsp_query-frame> | |
621 <Hsp_hit-frame>0</Hsp_hit-frame> | |
622 <Hsp_identity>281</Hsp_identity> | |
623 <Hsp_positive>314</Hsp_positive> | |
624 <Hsp_gaps>1</Hsp_gaps> | |
625 <Hsp_align-len>342</Hsp_align-len> | |
626 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE</Hsp_qseq> | |
627 <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq> | |
628 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +D ASAT SKTE</Hsp_midline> | |
629 </Hsp> | |
630 </Hit_hsps> | |
631 </Hit> | |
632 </Iteration_hits> | |
633 <Iteration_stat> | |
634 <Statistics> | |
635 <Statistics_db-num>0</Statistics_db-num> | |
636 <Statistics_db-len>0</Statistics_db-len> | |
637 <Statistics_hsp-len>29</Statistics_hsp-len> | |
638 <Statistics_eff-space>101761</Statistics_eff-space> | |
639 <Statistics_kappa>0.041</Statistics_kappa> | |
640 <Statistics_lambda>0.267</Statistics_lambda> | |
641 <Statistics_entropy>0.14</Statistics_entropy> | |
642 </Statistics> | |
643 </Iteration_stat> | |
644 </Iteration> | |
645 </BlastOutput_iterations> | |
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1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
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changeset
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646 </BlastOutput> |