Mercurial > repos > devteam > ncbi_blast_plus
comparison test-data/tblastn_four_human_vs_rhodopsin.xml @ 8:1f546099212f draft
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
author | peterjc |
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date | Tue, 19 Feb 2013 12:49:43 -0500 |
parents | d375502056f1 |
children | 4c4a0da938ff |
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7:4ce66a5401d0 | 8:1f546099212f |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd"> | 2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
3 <BlastOutput> | 3 <BlastOutput> |
4 <BlastOutput_program>tblastn</BlastOutput_program> | 4 <BlastOutput_program>tblastn</BlastOutput_program> |
5 <BlastOutput_version>TBLASTN 2.2.25+</BlastOutput_version> | 5 <BlastOutput_version>TBLASTN 2.2.26+</BlastOutput_version> |
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> | 6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> |
7 <BlastOutput_db></BlastOutput_db> | 7 <BlastOutput_db></BlastOutput_db> |
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> | 8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> |
9 <BlastOutput_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def> | 9 <BlastOutput_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def> |
10 <BlastOutput_query-len>406</BlastOutput_query-len> | 10 <BlastOutput_query-len>406</BlastOutput_query-len> |
373 <Hit_accession>Subject_1</Hit_accession> | 373 <Hit_accession>Subject_1</Hit_accession> |
374 <Hit_len>1047</Hit_len> | 374 <Hit_len>1047</Hit_len> |
375 <Hit_hsps> | 375 <Hit_hsps> |
376 <Hsp> | 376 <Hsp> |
377 <Hsp_num>1</Hsp_num> | 377 <Hsp_num>1</Hsp_num> |
378 <Hsp_bit-score>732.392902459534</Hsp_bit-score> | 378 <Hsp_bit-score>732.393</Hsp_bit-score> |
379 <Hsp_score>1689</Hsp_score> | 379 <Hsp_score>1689</Hsp_score> |
380 <Hsp_evalue>0</Hsp_evalue> | 380 <Hsp_evalue>0</Hsp_evalue> |
381 <Hsp_query-from>1</Hsp_query-from> | 381 <Hsp_query-from>1</Hsp_query-from> |
382 <Hsp_query-to>348</Hsp_query-to> | 382 <Hsp_query-to>348</Hsp_query-to> |
383 <Hsp_hit-from>1</Hsp_hit-from> | 383 <Hsp_hit-from>1</Hsp_hit-from> |
420 <Hit_accession>Subject_2</Hit_accession> | 420 <Hit_accession>Subject_2</Hit_accession> |
421 <Hit_len>1574</Hit_len> | 421 <Hit_len>1574</Hit_len> |
422 <Hit_hsps> | 422 <Hit_hsps> |
423 <Hsp> | 423 <Hsp> |
424 <Hsp_num>1</Hsp_num> | 424 <Hsp_num>1</Hsp_num> |
425 <Hsp_bit-score>646.119739014374</Hsp_bit-score> | 425 <Hsp_bit-score>646.12</Hsp_bit-score> |
426 <Hsp_score>1489</Hsp_score> | 426 <Hsp_score>1489</Hsp_score> |
427 <Hsp_evalue>0</Hsp_evalue> | 427 <Hsp_evalue>0</Hsp_evalue> |
428 <Hsp_query-from>1</Hsp_query-from> | 428 <Hsp_query-from>1</Hsp_query-from> |
429 <Hsp_query-to>341</Hsp_query-to> | 429 <Hsp_query-to>341</Hsp_query-to> |
430 <Hsp_hit-from>42</Hsp_hit-from> | 430 <Hsp_hit-from>42</Hsp_hit-from> |
467 <Hit_accession>Subject_3</Hit_accession> | 467 <Hit_accession>Subject_3</Hit_accession> |
468 <Hit_len>4301</Hit_len> | 468 <Hit_len>4301</Hit_len> |
469 <Hit_hsps> | 469 <Hit_hsps> |
470 <Hsp> | 470 <Hsp> |
471 <Hsp_num>1</Hsp_num> | 471 <Hsp_num>1</Hsp_num> |
472 <Hsp_bit-score>151.343146656381</Hsp_bit-score> | 472 <Hsp_bit-score>151.343</Hsp_bit-score> |
473 <Hsp_score>342</Hsp_score> | 473 <Hsp_score>342</Hsp_score> |
474 <Hsp_evalue>1.39566684546685e-72</Hsp_evalue> | 474 <Hsp_evalue>1.39567e-72</Hsp_evalue> |
475 <Hsp_query-from>239</Hsp_query-from> | 475 <Hsp_query-from>239</Hsp_query-from> |
476 <Hsp_query-to>312</Hsp_query-to> | 476 <Hsp_query-to>312</Hsp_query-to> |
477 <Hsp_hit-from>3147</Hsp_hit-from> | 477 <Hsp_hit-from>3147</Hsp_hit-from> |
478 <Hsp_hit-to>3368</Hsp_hit-to> | 478 <Hsp_hit-to>3368</Hsp_hit-to> |
479 <Hsp_query-frame>0</Hsp_query-frame> | 479 <Hsp_query-frame>0</Hsp_query-frame> |
486 <Hsp_hseq>ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_hseq> | 486 <Hsp_hseq>ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_hseq> |
487 <Hsp_midline>ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> | 487 <Hsp_midline>ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> |
488 </Hsp> | 488 </Hsp> |
489 <Hsp> | 489 <Hsp> |
490 <Hsp_num>2</Hsp_num> | 490 <Hsp_num>2</Hsp_num> |
491 <Hsp_bit-score>126.323929257285</Hsp_bit-score> | 491 <Hsp_bit-score>126.324</Hsp_bit-score> |
492 <Hsp_score>284</Hsp_score> | 492 <Hsp_score>284</Hsp_score> |
493 <Hsp_evalue>1.39566684546685e-72</Hsp_evalue> | 493 <Hsp_evalue>1.39567e-72</Hsp_evalue> |
494 <Hsp_query-from>177</Hsp_query-from> | 494 <Hsp_query-from>177</Hsp_query-from> |
495 <Hsp_query-to>235</Hsp_query-to> | 495 <Hsp_query-to>235</Hsp_query-to> |
496 <Hsp_hit-from>2855</Hsp_hit-from> | 496 <Hsp_hit-from>2855</Hsp_hit-from> |
497 <Hsp_hit-to>3031</Hsp_hit-to> | 497 <Hsp_hit-to>3031</Hsp_hit-to> |
498 <Hsp_query-frame>0</Hsp_query-frame> | 498 <Hsp_query-frame>0</Hsp_query-frame> |
505 <Hsp_hseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_hseq> | 505 <Hsp_hseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_hseq> |
506 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline> | 506 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline> |
507 </Hsp> | 507 </Hsp> |
508 <Hsp> | 508 <Hsp> |
509 <Hsp_num>3</Hsp_num> | 509 <Hsp_num>3</Hsp_num> |
510 <Hsp_bit-score>229.420359574251</Hsp_bit-score> | 510 <Hsp_bit-score>229.42</Hsp_bit-score> |
511 <Hsp_score>523</Hsp_score> | 511 <Hsp_score>523</Hsp_score> |
512 <Hsp_evalue>9.84654801241353e-65</Hsp_evalue> | 512 <Hsp_evalue>9.34154e-67</Hsp_evalue> |
513 <Hsp_query-from>11</Hsp_query-from> | 513 <Hsp_query-from>11</Hsp_query-from> |
514 <Hsp_query-to>121</Hsp_query-to> | 514 <Hsp_query-to>121</Hsp_query-to> |
515 <Hsp_hit-from>1</Hsp_hit-from> | 515 <Hsp_hit-from>1</Hsp_hit-from> |
516 <Hsp_hit-to>333</Hsp_hit-to> | 516 <Hsp_hit-to>333</Hsp_hit-to> |
517 <Hsp_query-frame>0</Hsp_query-frame> | 517 <Hsp_query-frame>0</Hsp_query-frame> |
524 <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> | 524 <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> |
525 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> | 525 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> |
526 </Hsp> | 526 </Hsp> |
527 <Hsp> | 527 <Hsp> |
528 <Hsp_num>4</Hsp_num> | 528 <Hsp_num>4</Hsp_num> |
529 <Hsp_bit-score>122.873002719478</Hsp_bit-score> | 529 <Hsp_bit-score>122.873</Hsp_bit-score> |
530 <Hsp_score>276</Hsp_score> | 530 <Hsp_score>276</Hsp_score> |
531 <Hsp_evalue>1.40732096096596e-32</Hsp_evalue> | 531 <Hsp_evalue>1.03783e-32</Hsp_evalue> |
532 <Hsp_query-from>119</Hsp_query-from> | 532 <Hsp_query-from>119</Hsp_query-from> |
533 <Hsp_query-to>177</Hsp_query-to> | 533 <Hsp_query-to>177</Hsp_query-to> |
534 <Hsp_hit-from>1404</Hsp_hit-from> | 534 <Hsp_hit-from>1404</Hsp_hit-from> |
535 <Hsp_hit-to>1580</Hsp_hit-to> | 535 <Hsp_hit-to>1580</Hsp_hit-to> |
536 <Hsp_query-frame>0</Hsp_query-frame> | 536 <Hsp_query-frame>0</Hsp_query-frame> |
543 <Hsp_hseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_hseq> | 543 <Hsp_hseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_hseq> |
544 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> | 544 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> |
545 </Hsp> | 545 </Hsp> |
546 <Hsp> | 546 <Hsp> |
547 <Hsp_num>5</Hsp_num> | 547 <Hsp_num>5</Hsp_num> |
548 <Hsp_bit-score>57.7367643183824</Hsp_bit-score> | 548 <Hsp_bit-score>57.7368</Hsp_bit-score> |
549 <Hsp_score>125</Hsp_score> | 549 <Hsp_score>125</Hsp_score> |
550 <Hsp_evalue>5.60065526485586e-13</Hsp_evalue> | 550 <Hsp_evalue>1.50808e-12</Hsp_evalue> |
551 <Hsp_query-from>312</Hsp_query-from> | 551 <Hsp_query-from>312</Hsp_query-from> |
552 <Hsp_query-to>337</Hsp_query-to> | 552 <Hsp_query-to>337</Hsp_query-to> |
553 <Hsp_hit-from>4222</Hsp_hit-from> | 553 <Hsp_hit-from>4222</Hsp_hit-from> |
554 <Hsp_hit-to>4299</Hsp_hit-to> | 554 <Hsp_hit-to>4299</Hsp_hit-to> |
555 <Hsp_query-frame>0</Hsp_query-frame> | 555 <Hsp_query-frame>0</Hsp_query-frame> |
590 <Hit_accession>Subject_4</Hit_accession> | 590 <Hit_accession>Subject_4</Hit_accession> |
591 <Hit_len>983</Hit_len> | 591 <Hit_len>983</Hit_len> |
592 <Hit_hsps> | 592 <Hit_hsps> |
593 <Hsp> | 593 <Hsp> |
594 <Hsp_num>1</Hsp_num> | 594 <Hsp_num>1</Hsp_num> |
595 <Hsp_bit-score>658.197981896696</Hsp_bit-score> | 595 <Hsp_bit-score>658.198</Hsp_bit-score> |
596 <Hsp_score>1517</Hsp_score> | 596 <Hsp_score>1517</Hsp_score> |
597 <Hsp_evalue>0</Hsp_evalue> | 597 <Hsp_evalue>0</Hsp_evalue> |
598 <Hsp_query-from>11</Hsp_query-from> | 598 <Hsp_query-from>11</Hsp_query-from> |
599 <Hsp_query-to>336</Hsp_query-to> | 599 <Hsp_query-to>336</Hsp_query-to> |
600 <Hsp_hit-from>1</Hsp_hit-from> | 600 <Hsp_hit-from>1</Hsp_hit-from> |
637 <Hit_accession>Subject_5</Hit_accession> | 637 <Hit_accession>Subject_5</Hit_accession> |
638 <Hit_len>1047</Hit_len> | 638 <Hit_len>1047</Hit_len> |
639 <Hit_hsps> | 639 <Hit_hsps> |
640 <Hsp> | 640 <Hsp> |
641 <Hsp_num>1</Hsp_num> | 641 <Hsp_num>1</Hsp_num> |
642 <Hsp_bit-score>711.255977415469</Hsp_bit-score> | 642 <Hsp_bit-score>711.256</Hsp_bit-score> |
643 <Hsp_score>1640</Hsp_score> | 643 <Hsp_score>1640</Hsp_score> |
644 <Hsp_evalue>0</Hsp_evalue> | 644 <Hsp_evalue>0</Hsp_evalue> |
645 <Hsp_query-from>1</Hsp_query-from> | 645 <Hsp_query-from>1</Hsp_query-from> |
646 <Hsp_query-to>348</Hsp_query-to> | 646 <Hsp_query-to>348</Hsp_query-to> |
647 <Hsp_hit-from>1</Hsp_hit-from> | 647 <Hsp_hit-from>1</Hsp_hit-from> |
684 <Hit_accession>Subject_6</Hit_accession> | 684 <Hit_accession>Subject_6</Hit_accession> |
685 <Hit_len>1344</Hit_len> | 685 <Hit_len>1344</Hit_len> |
686 <Hit_hsps> | 686 <Hit_hsps> |
687 <Hsp> | 687 <Hsp> |
688 <Hsp_num>1</Hsp_num> | 688 <Hsp_num>1</Hsp_num> |
689 <Hsp_bit-score>626.708277239213</Hsp_bit-score> | 689 <Hsp_bit-score>626.708</Hsp_bit-score> |
690 <Hsp_score>1444</Hsp_score> | 690 <Hsp_score>1444</Hsp_score> |
691 <Hsp_evalue>0</Hsp_evalue> | 691 <Hsp_evalue>0</Hsp_evalue> |
692 <Hsp_query-from>1</Hsp_query-from> | 692 <Hsp_query-from>1</Hsp_query-from> |
693 <Hsp_query-to>341</Hsp_query-to> | 693 <Hsp_query-to>341</Hsp_query-to> |
694 <Hsp_hit-from>23</Hsp_hit-from> | 694 <Hsp_hit-from>23</Hsp_hit-from> |