Mercurial > repos > devteam > ncbi_blast_plus

diff test-data/tblastn_four_human_vs_rhodopsin.xml @ 8:1f546099212f draft

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Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
author peterjc
date Tue, 19 Feb 2013 12:49:43 -0500
parents d375502056f1
children 4c4a0da938ff
line wrap: on
line diff
--- a/test-data/tblastn_four_human_vs_rhodopsin.xml	Fri Feb 08 05:51:26 2013 -0500
+++ b/test-data/tblastn_four_human_vs_rhodopsin.xml	Tue Feb 19 12:49:43 2013 -0500
@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
-<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd">
+<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
 <BlastOutput>
   <BlastOutput_program>tblastn</BlastOutput_program>
-  <BlastOutput_version>TBLASTN 2.2.25+</BlastOutput_version>
+  <BlastOutput_version>TBLASTN 2.2.26+</BlastOutput_version>
   <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
   <BlastOutput_db></BlastOutput_db>
   <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
@@ -375,7 +375,7 @@
           <Hit_hsps>
             <Hsp>
               <Hsp_num>1</Hsp_num>
-              <Hsp_bit-score>732.392902459534</Hsp_bit-score>
+              <Hsp_bit-score>732.393</Hsp_bit-score>
               <Hsp_score>1689</Hsp_score>
               <Hsp_evalue>0</Hsp_evalue>
               <Hsp_query-from>1</Hsp_query-from>
@@ -422,7 +422,7 @@
           <Hit_hsps>
             <Hsp>
               <Hsp_num>1</Hsp_num>
-              <Hsp_bit-score>646.119739014374</Hsp_bit-score>
+              <Hsp_bit-score>646.12</Hsp_bit-score>
               <Hsp_score>1489</Hsp_score>
               <Hsp_evalue>0</Hsp_evalue>
               <Hsp_query-from>1</Hsp_query-from>
@@ -469,9 +469,9 @@
           <Hit_hsps>
             <Hsp>
               <Hsp_num>1</Hsp_num>
-              <Hsp_bit-score>151.343146656381</Hsp_bit-score>
+              <Hsp_bit-score>151.343</Hsp_bit-score>
               <Hsp_score>342</Hsp_score>
-              <Hsp_evalue>1.39566684546685e-72</Hsp_evalue>
+              <Hsp_evalue>1.39567e-72</Hsp_evalue>
               <Hsp_query-from>239</Hsp_query-from>
               <Hsp_query-to>312</Hsp_query-to>
               <Hsp_hit-from>3147</Hsp_hit-from>
@@ -488,9 +488,9 @@
             </Hsp>
             <Hsp>
               <Hsp_num>2</Hsp_num>
-              <Hsp_bit-score>126.323929257285</Hsp_bit-score>
+              <Hsp_bit-score>126.324</Hsp_bit-score>
               <Hsp_score>284</Hsp_score>
-              <Hsp_evalue>1.39566684546685e-72</Hsp_evalue>
+              <Hsp_evalue>1.39567e-72</Hsp_evalue>
               <Hsp_query-from>177</Hsp_query-from>
               <Hsp_query-to>235</Hsp_query-to>
               <Hsp_hit-from>2855</Hsp_hit-from>
@@ -507,9 +507,9 @@
             </Hsp>
             <Hsp>
               <Hsp_num>3</Hsp_num>
-              <Hsp_bit-score>229.420359574251</Hsp_bit-score>
+              <Hsp_bit-score>229.42</Hsp_bit-score>
               <Hsp_score>523</Hsp_score>
-              <Hsp_evalue>9.84654801241353e-65</Hsp_evalue>
+              <Hsp_evalue>9.34154e-67</Hsp_evalue>
               <Hsp_query-from>11</Hsp_query-from>
               <Hsp_query-to>121</Hsp_query-to>
               <Hsp_hit-from>1</Hsp_hit-from>
@@ -526,9 +526,9 @@
             </Hsp>
             <Hsp>
               <Hsp_num>4</Hsp_num>
-              <Hsp_bit-score>122.873002719478</Hsp_bit-score>
+              <Hsp_bit-score>122.873</Hsp_bit-score>
               <Hsp_score>276</Hsp_score>
-              <Hsp_evalue>1.40732096096596e-32</Hsp_evalue>
+              <Hsp_evalue>1.03783e-32</Hsp_evalue>
               <Hsp_query-from>119</Hsp_query-from>
               <Hsp_query-to>177</Hsp_query-to>
               <Hsp_hit-from>1404</Hsp_hit-from>
@@ -545,9 +545,9 @@
             </Hsp>
             <Hsp>
               <Hsp_num>5</Hsp_num>
-              <Hsp_bit-score>57.7367643183824</Hsp_bit-score>
+              <Hsp_bit-score>57.7368</Hsp_bit-score>
               <Hsp_score>125</Hsp_score>
-              <Hsp_evalue>5.60065526485586e-13</Hsp_evalue>
+              <Hsp_evalue>1.50808e-12</Hsp_evalue>
               <Hsp_query-from>312</Hsp_query-from>
               <Hsp_query-to>337</Hsp_query-to>
               <Hsp_hit-from>4222</Hsp_hit-from>
@@ -592,7 +592,7 @@
           <Hit_hsps>
             <Hsp>
               <Hsp_num>1</Hsp_num>
-              <Hsp_bit-score>658.197981896696</Hsp_bit-score>
+              <Hsp_bit-score>658.198</Hsp_bit-score>
               <Hsp_score>1517</Hsp_score>
               <Hsp_evalue>0</Hsp_evalue>
               <Hsp_query-from>11</Hsp_query-from>
@@ -639,7 +639,7 @@
           <Hit_hsps>
             <Hsp>
               <Hsp_num>1</Hsp_num>
-              <Hsp_bit-score>711.255977415469</Hsp_bit-score>
+              <Hsp_bit-score>711.256</Hsp_bit-score>
               <Hsp_score>1640</Hsp_score>
               <Hsp_evalue>0</Hsp_evalue>
               <Hsp_query-from>1</Hsp_query-from>
@@ -686,7 +686,7 @@
           <Hit_hsps>
             <Hsp>
               <Hsp_num>1</Hsp_num>
-              <Hsp_bit-score>626.708277239213</Hsp_bit-score>
+              <Hsp_bit-score>626.708</Hsp_bit-score>
               <Hsp_score>1444</Hsp_score>
               <Hsp_evalue>0</Hsp_evalue>
               <Hsp_query-from>1</Hsp_query-from>
@@ -719,4 +719,4 @@
       </Iteration_stat>
     </Iteration>
   </BlastOutput_iterations>
-</BlastOutput>
+</BlastOutput>
\ No newline at end of file