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comparison test-data/tblastn_four_human_vs_rhodopsin.html @ 18:577d9c12411a draft

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v0.1.06, now using BLAST+ 2.2.31
author peterjc
date Mon, 07 Sep 2015 04:44:24 -0400
parents c16c30e9ad5b
children 7538e2bfcd41
comparison
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17:697f40151eaf 18:577d9c12411a
1 <HTML> 1 <HTML>
2 <TITLE>BLAST Search Results</TITLE> 2 <TITLE>BLAST Search Results</TITLE>
3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099"> 3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
4 <PRE> 4 <PRE>
5 5
6 <b>TBLASTN 2.2.30+</b> 6 <b>TBLASTN 2.2.31+</b>
7 7
8 8
9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
10 OS=Homo sapiens GN=ERP44 PE=1 SV=1 10 OS=Homo sapiens GN=ERP44 PE=1 SV=1
11 11
460 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA 460 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
461 461
462 Length=1047 462 Length=1047
463 463
464 464
465 Score = 732 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. 465 Score = 732 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
466 Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%) 466 Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%)
467 Frame = +1 467 Frame = +1
468 468
469 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 469 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
470 MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 470 MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
510 cds 510 cds
511 511
512 Length=1574 512 Length=1574
513 513
514 514
515 Score = 646 bits (1489), Expect = 0.0, Method: Compositional matrix adjust. 515 Score = 646 bits (1489), Expect = 0.0, Method: Compositional matrix adjust.
516 Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%) 516 Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%)
517 Frame = +3 517 Frame = +3
518 518
519 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 519 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
520 MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLY 520 MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLY
560 rhodopsin (RHO) gene, exons 1 through 5 and partial cds 560 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
561 561
562 Length=4301 562 Length=4301
563 563
564 564
565 Score = 151 bits (342), Expect(2) = 1e-72, Method: Compositional matrix adjust. 565 Score = 151 bits (342), Expect(2) = 1e-72, Method: Compositional matrix adjust.
566 Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%) 566 Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
567 Frame = +3 567 Frame = +3
568 568
569 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298 569 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298
570 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+ 570 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
573 Query 299 AIYNPVIYIMMNKQ 312 573 Query 299 AIYNPVIYIMMNKQ 312
574 +IYNPVIYIMMNKQ 574 +IYNPVIYIMMNKQ
575 Sbjct 3327 SIYNPVIYIMMNKQ 3368 575 Sbjct 3327 SIYNPVIYIMMNKQ 3368
576 576
577 577
578 Score = 126 bits (284), Expect(2) = 1e-72, Method: Compositional matrix adjust. 578 Score = 126 bits (284), Expect(2) = 1e-72, Method: Compositional matrix adjust.
579 Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%) 579 Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%)
580 Frame = +2 580 Frame = +2
581 581
582 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235 582 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235
583 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE + 583 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +
584 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031 584 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031
585 585
586 586
587 Score = 229 bits (523), Expect = 9e-67, Method: Compositional matrix adjust. 587 Score = 229 bits (523), Expect = 9e-67, Method: Compositional matrix adjust.
588 Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%) 588 Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%)
589 Frame = +1 589 Frame = +1
590 590
591 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 591 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
592 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 592 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
595 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 121 595 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 121
596 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG 596 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
597 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333 597 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333
598 598
599 599
600 Score = 122 bits (276), Expect = 1e-32, Method: Compositional matrix adjust. 600 Score = 122 bits (276), Expect = 1e-32, Method: Compositional matrix adjust.
601 Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%) 601 Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
602 Frame = +3 602 Frame = +3
603 603
604 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177 604 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177
605 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR 605 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
634 (RHO) mRNA, partial cds 634 (RHO) mRNA, partial cds
635 635
636 Length=983 636 Length=983
637 637
638 638
639 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust. 639 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust.
640 Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%) 640 Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
641 Frame = +1 641 Frame = +1
642 642
643 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 643 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
644 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 644 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
684 rhodopsin, complete cds 684 rhodopsin, complete cds
685 685
686 Length=1047 686 Length=1047
687 687
688 688
689 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust. 689 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
690 Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%) 690 Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
691 Frame = +1 691 Frame = +1
692 692
693 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 693 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
694 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY 694 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
734 water form rod opsin, complete cds 734 water form rod opsin, complete cds
735 735
736 Length=1344 736 Length=1344
737 737
738 738
739 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust. 739 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust.
740 Identities = 281/342 (82%), Positives = 311/342 (91%), Gaps = 1/342 (0%) 740 Identities = 281/342 (82%), Positives = 311/342 (91%), Gaps = 1/342 (0%)
741 Frame = +2 741 Frame = +2
742 742
743 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 743 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
744 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY 744 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY