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diff test-data/tblastn_four_human_vs_rhodopsin.html @ 2:ab1a8640f817 draft

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Uploaded v0.0.12 again, without extra path
author peterjc
date Thu, 23 Aug 2012 07:32:06 -0400
parents d375502056f1
children 1f546099212f
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/tblastn_four_human_vs_rhodopsin.html	Thu Aug 23 07:32:06 2012 -0400
@@ -0,0 +1,787 @@
+<HTML>
+<TITLE>BLAST Search Results</TITLE>
+<BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
+<PRE>
+
+<b>TBLASTN 2.2.25+</b>
+
+
+<b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
+OS=Homo sapiens GN=ERP44 PE=1 SV=1
+
+Length=406
+
+<b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
+
+Length=1047
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.347    0.182    0.684 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 127710
+
+
+<b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
+OS=Homo sapiens GN=ERP44 PE=1 SV=1
+
+Length=406
+
+<b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
+cds
+
+Length=1574
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.347    0.182    0.684 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 127710
+
+
+<b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
+OS=Homo sapiens GN=ERP44 PE=1 SV=1
+
+Length=406
+
+<b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
+rhodopsin (RHO) gene, exons 1 through 5 and partial cds
+
+Length=4301
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.347    0.182    0.684 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 127710
+
+
+<b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
+OS=Homo sapiens GN=ERP44 PE=1 SV=1
+
+Length=406
+
+<b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
+(RHO) mRNA, partial cds
+
+Length=983
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.347    0.182    0.684 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 127710
+
+
+<b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
+OS=Homo sapiens GN=ERP44 PE=1 SV=1
+
+Length=406
+
+<b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
+rhodopsin, complete cds
+
+Length=1047
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.347    0.182    0.684 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 127710
+
+
+<b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
+OS=Homo sapiens GN=ERP44 PE=1 SV=1
+
+Length=406
+
+<b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
+water form rod opsin, complete cds
+
+Length=1344
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.347    0.182    0.684 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 127710
+
+
+<b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
+GN=BMP2K PE=1 SV=2
+
+Length=1161
+
+<b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
+
+Length=1047
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.334    0.170    0.615 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 370988
+
+
+<b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
+GN=BMP2K PE=1 SV=2
+
+Length=1161
+
+<b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
+cds
+
+Length=1574
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.334    0.170    0.615 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 370988
+
+
+<b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
+GN=BMP2K PE=1 SV=2
+
+Length=1161
+
+<b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
+rhodopsin (RHO) gene, exons 1 through 5 and partial cds
+
+Length=4301
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.334    0.170    0.615 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 370988
+
+
+<b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
+GN=BMP2K PE=1 SV=2
+
+Length=1161
+
+<b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
+(RHO) mRNA, partial cds
+
+Length=983
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.334    0.170    0.615 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 370988
+
+
+<b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
+GN=BMP2K PE=1 SV=2
+
+Length=1161
+
+<b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
+rhodopsin, complete cds
+
+Length=1047
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.334    0.170    0.615 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 370988
+
+
+<b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
+GN=BMP2K PE=1 SV=2
+
+Length=1161
+
+<b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
+water form rod opsin, complete cds
+
+Length=1344
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.334    0.170    0.615 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 370988
+
+
+<b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
+SV=4
+
+Length=1382
+
+<b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
+
+Length=1047
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.346    0.180    0.700 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 441350
+
+
+<b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
+SV=4
+
+Length=1382
+
+<b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
+cds
+
+Length=1574
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.346    0.180    0.700 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 441350
+
+
+<b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
+SV=4
+
+Length=1382
+
+<b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
+rhodopsin (RHO) gene, exons 1 through 5 and partial cds
+
+Length=4301
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.346    0.180    0.700 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 441350
+
+
+<b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
+SV=4
+
+Length=1382
+
+<b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
+(RHO) mRNA, partial cds
+
+Length=983
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.346    0.180    0.700 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 441350
+
+
+<b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
+SV=4
+
+Length=1382
+
+<b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
+rhodopsin, complete cds
+
+Length=1047
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.346    0.180    0.700 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 441350
+
+
+<b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
+SV=4
+
+Length=1382
+
+<b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
+water form rod opsin, complete cds
+
+Length=1344
+
+
+***** No hits found *****
+
+
+
+Lambda     K      H
+   0.346    0.180    0.700 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 441350
+
+
+<b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+
+Length=348
+
+<b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
+
+Length=1047
+
+<script src="blastResult.js"></script>
+ Score =  732 bits (1689),  Expect = 0.0, Method: Compositional matrix adjust.
+ Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%)
+ Frame = +1
+
+Query  1     MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY  60
+             MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
+Sbjct  1     MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY  180
+
+Query  61    VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG  120
+             VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
+Sbjct  181   VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG  360
+
+Query  121   GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP  180
+             GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
+Sbjct  361   GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP  540
+
+Query  181   EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES  240
+             EG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQES
+Sbjct  541   EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES  720
+
+Query  241   ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI  300
+             ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++I
+Sbjct  721   ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSI  900
+
+Query  301   YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA  348
+             YNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA
+Sbjct  901   YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA  1044
+
+
+
+Lambda     K      H
+   0.351    0.182    0.707 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 109230
+
+
+<b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+
+Length=348
+
+<b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
+cds
+
+Length=1574
+
+<script src="blastResult.js"></script>
+ Score =  646 bits (1489),  Expect = 0.0, Method: Compositional matrix adjust.
+ Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%)
+ Frame = +3
+
+Query  1     MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY  60
+             MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLY
+Sbjct  42    MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLY  221
+
+Query  61    VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG  120
+             VT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLG
+Sbjct  222   VTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLG  401
+
+Query  121   GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP  180
+             GEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIP
+Sbjct  402   GEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIP  581
+
+Query  181   EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES  240
+             EG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQES
+Sbjct  582   EGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQES  761
+
+Query  241   ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI  300
+             ATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++I
+Sbjct  762   ATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSI  941
+
+Query  301   YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE  341
+             YNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA  SKTE
+Sbjct  942   YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE  1067
+
+
+
+Lambda     K      H
+   0.351    0.182    0.707 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 109230
+
+
+<b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+
+Length=348
+
+<b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
+rhodopsin (RHO) gene, exons 1 through 5 and partial cds
+
+Length=4301
+
+<script src="blastResult.js"></script>
+ Score =  151 bits (342),  Expect(2) = 1e-72, Method: Compositional matrix adjust.
+ Identities = 69/74 (94%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
+ Frame = +3
+
+Query  239   ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA  298
+             ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
+Sbjct  3147  ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS  3326
+
+Query  299   AIYNPVIYIMMNKQ  312
+             +IYNPVIYIMMNKQ
+Sbjct  3327  SIYNPVIYIMMNKQ  3368
+
+
+ Score =  126 bits (284),  Expect(2) = 1e-72, Method: Compositional matrix adjust.
+ Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%)
+ Frame = +2
+
+Query  177   RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA  235
+             RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE  +
+Sbjct  2855  RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS  3031
+
+
+ Score =  229 bits (523),  Expect = 1e-64, Method: Compositional matrix adjust.
+ Identities = 107/111 (97%), Positives = 109/111 (99%), Gaps = 0/111 (0%)
+ Frame = +1
+
+Query  11   VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  70
+            VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
+Sbjct  1    VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  180
+
+Query  71   PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG  121
+            PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
+Sbjct  181  PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG  333
+
+
+ Score =  122 bits (276),  Expect = 1e-32, Method: Compositional matrix adjust.
+ Identities = 55/59 (94%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
+ Frame = +3
+
+Query  119   LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR  177
+             L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
+Sbjct  1404  LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR  1580
+
+
+ Score = 57.7 bits (125),  Expect = 6e-13, Method: Compositional matrix adjust.
+ Identities = 23/26 (89%), Positives = 24/26 (93%), Gaps = 0/26 (0%)
+ Frame = +1
+
+Query  312   QFRNCMLTTICCGKNPLGDDEASATV  337
+             QFRNCMLTT+CCGKNPLGDDEAS T 
+Sbjct  4222  QFRNCMLTTLCCGKNPLGDDEASTTA  4299
+
+
+
+Lambda     K      H
+   0.351    0.182    0.707 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 109230
+
+
+<b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+
+Length=348
+
+<b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
+(RHO) mRNA, partial cds
+
+Length=983
+
+<script src="blastResult.js"></script>
+ Score =  658 bits (1517),  Expect = 0.0, Method: Compositional matrix adjust.
+ Identities = 310/326 (96%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
+ Frame = +1
+
+Query  11   VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  70
+            VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
+Sbjct  1    VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  180
+
+Query  71   PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV  130
+            PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV
+Sbjct  181  PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV  360
+
+Query  131  LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID  190
+            LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID
+Sbjct  361  LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID  540
+
+Query  191  YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV  250
+            YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV
+Sbjct  541  YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV  720
+
+Query  251  TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN  310
+            TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN
+Sbjct  721  TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN  900
+
+Query  311  KQFRNCMLTTICCGKNPLGDDEASAT  336
+            KQFRNCMLTT+CCGKNPLGDDEAS T
+Sbjct  901  KQFRNCMLTTLCCGKNPLGDDEASTT  978
+
+
+
+Lambda     K      H
+   0.351    0.182    0.707 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 109230
+
+
+<b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+
+Length=348
+
+<b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
+rhodopsin, complete cds
+
+Length=1047
+
+<script src="blastResult.js"></script>
+ Score =  711 bits (1640),  Expect = 0.0, Method: Compositional matrix adjust.
+ Identities = 325/348 (94%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
+ Frame = +1
+
+Query  1     MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY  60
+             MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
+Sbjct  1     MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY  180
+
+Query  61    VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG  120
+             VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
+Sbjct  181   VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG  360
+
+Query  121   GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP  180
+             GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
+Sbjct  361   GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP  540
+
+Query  181   EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES  240
+             EG+QCSCGIDYYT   E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES
+Sbjct  541   EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES  720
+
+Query  241   ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI  300
+             ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+
+Sbjct  721   ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV  900
+
+Query  301   YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA  348
+             YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
+Sbjct  901   YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA  1044
+
+
+
+Lambda     K      H
+   0.351    0.182    0.707 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 109230
+
+
+<b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+
+Length=348
+
+<b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
+water form rod opsin, complete cds
+
+Length=1344
+
+<script src="blastResult.js"></script>
+ Score =  626 bits (1444),  Expect = 0.0, Method: Compositional matrix adjust.
+ Identities = 281/342 (83%), Positives = 311/342 (91%), Gaps = 1/342 (0%)
+ Frame = +2
+
+Query  1     MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY  60
+             MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY
+Sbjct  23    MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY  202
+
+Query  61    VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG  120
+             VT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLG
+Sbjct  203   VTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLG  382
+
+Query  121   GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP  180
+             GEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV  TW MALACA PPL GWSRYIP
+Sbjct  383   GEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIP  562
+
+Query  181   EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES  240
+             EGLQCSCGIDYYT  P +NNESFVIYMF  HF+IP+ +I FCYG+LV TVKEAAAQQQES
+Sbjct  563   EGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQES  742
+
+Query  241   ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI  300
+              TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+
+Sbjct  743   ETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSAL  922
+
+Query  301   YNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE  341
+             YNP+IYI MNKQFR CM+TT+CCGKNP   +D ASAT SKTE
+Sbjct  923   YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE  1048
+
+
+
+Lambda     K      H
+   0.351    0.182    0.707 
+
+Gapped
+Lambda     K      H
+   0.299   0.0710    0.270 
+
+Effective search space used: 109230
+
+
+
+
+Matrix: BLOSUM80
+Gap Penalties: Existence: 10, Extension: 1
+Neighboring words threshold: 14
+Window for multiple hits: 25
+</PRE>
+</BODY>
+</HTML>