Mercurial > repos > devteam > ncbi_blast_plus
view test-data/tblastn_four_human_vs_rhodopsin.xml @ 10:70e7dcbf6573 draft
Uploaded v0.0.20, handles dependencies via package_blast_plus_2_2_26, development moved to GitHub, RST README, MIT licence, citation information, more tests, percentage identity option to BLASTN, cElementTree to ElementTree fallback.
| author | peterjc |
|---|---|
| date | Mon, 23 Sep 2013 06:14:13 -0400 |
| parents | 1f546099212f |
| children | 4c4a0da938ff |
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<?xml version="1.0"?> <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> <BlastOutput> <BlastOutput_program>tblastn</BlastOutput_program> <BlastOutput_version>TBLASTN 2.2.26+</BlastOutput_version> <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> <BlastOutput_db></BlastOutput_db> <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> <BlastOutput_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def> <BlastOutput_query-len>406</BlastOutput_query-len> <BlastOutput_param> <Parameters> <Parameters_matrix>BLOSUM80</Parameters_matrix> <Parameters_expect>1e-10</Parameters_expect> <Parameters_gap-open>10</Parameters_gap-open> <Parameters_gap-extend>1</Parameters_gap-extend> <Parameters_filter>F</Parameters_filter> </Parameters> </BlastOutput_param> <BlastOutput_iterations> <Iteration> <Iteration_iter-num>1</Iteration_iter-num> <Iteration_query-ID>Query_1</Iteration_query-ID> <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> <Iteration_query-len>406</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>19</Statistics_hsp-len> <Statistics_eff-space>127710</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>2</Iteration_iter-num> <Iteration_query-ID>Query_1</Iteration_query-ID> <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> <Iteration_query-len>406</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>19</Statistics_hsp-len> <Statistics_eff-space>127710</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>3</Iteration_iter-num> <Iteration_query-ID>Query_1</Iteration_query-ID> <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> <Iteration_query-len>406</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>19</Statistics_hsp-len> <Statistics_eff-space>127710</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>4</Iteration_iter-num> <Iteration_query-ID>Query_1</Iteration_query-ID> <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> <Iteration_query-len>406</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>19</Statistics_hsp-len> <Statistics_eff-space>127710</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>5</Iteration_iter-num> <Iteration_query-ID>Query_1</Iteration_query-ID> <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> <Iteration_query-len>406</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>19</Statistics_hsp-len> <Statistics_eff-space>127710</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>6</Iteration_iter-num> <Iteration_query-ID>Query_1</Iteration_query-ID> <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> <Iteration_query-len>406</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>19</Statistics_hsp-len> <Statistics_eff-space>127710</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>7</Iteration_iter-num> <Iteration_query-ID>Query_2</Iteration_query-ID> <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> <Iteration_query-len>1161</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>23</Statistics_hsp-len> <Statistics_eff-space>370988</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>8</Iteration_iter-num> <Iteration_query-ID>Query_2</Iteration_query-ID> <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> <Iteration_query-len>1161</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>23</Statistics_hsp-len> <Statistics_eff-space>370988</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>9</Iteration_iter-num> <Iteration_query-ID>Query_2</Iteration_query-ID> <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> <Iteration_query-len>1161</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>23</Statistics_hsp-len> <Statistics_eff-space>370988</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>10</Iteration_iter-num> <Iteration_query-ID>Query_2</Iteration_query-ID> <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> <Iteration_query-len>1161</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>23</Statistics_hsp-len> <Statistics_eff-space>370988</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>11</Iteration_iter-num> <Iteration_query-ID>Query_2</Iteration_query-ID> <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> <Iteration_query-len>1161</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>23</Statistics_hsp-len> <Statistics_eff-space>370988</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>12</Iteration_iter-num> <Iteration_query-ID>Query_2</Iteration_query-ID> <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> <Iteration_query-len>1161</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>23</Statistics_hsp-len> <Statistics_eff-space>370988</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>13</Iteration_iter-num> <Iteration_query-ID>Query_3</Iteration_query-ID> <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> <Iteration_query-len>1382</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>24</Statistics_hsp-len> <Statistics_eff-space>441350</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>14</Iteration_iter-num> <Iteration_query-ID>Query_3</Iteration_query-ID> <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> <Iteration_query-len>1382</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>24</Statistics_hsp-len> <Statistics_eff-space>441350</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>15</Iteration_iter-num> <Iteration_query-ID>Query_3</Iteration_query-ID> <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> <Iteration_query-len>1382</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>24</Statistics_hsp-len> <Statistics_eff-space>441350</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>16</Iteration_iter-num> <Iteration_query-ID>Query_3</Iteration_query-ID> <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> <Iteration_query-len>1382</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>24</Statistics_hsp-len> <Statistics_eff-space>441350</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>17</Iteration_iter-num> <Iteration_query-ID>Query_3</Iteration_query-ID> <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> <Iteration_query-len>1382</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>24</Statistics_hsp-len> <Statistics_eff-space>441350</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>18</Iteration_iter-num> <Iteration_query-ID>Query_3</Iteration_query-ID> <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> <Iteration_query-len>1382</Iteration_query-len> <Iteration_hits></Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>24</Statistics_hsp-len> <Statistics_eff-space>441350</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> <Iteration> <Iteration_iter-num>19</Iteration_iter-num> <Iteration_query-ID>Query_4</Iteration_query-ID> <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> <Iteration_query-len>348</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_1</Hit_id> <Hit_def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Hit_def> <Hit_accession>Subject_1</Hit_accession> <Hit_len>1047</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>732.393</Hsp_bit-score> <Hsp_score>1689</Hsp_score> <Hsp_evalue>0</Hsp_evalue> <Hsp_query-from>1</Hsp_query-from> <Hsp_query-to>348</Hsp_query-to> <Hsp_hit-from>1</Hsp_hit-from> <Hsp_hit-to>1044</Hsp_hit-to> <Hsp_query-frame>0</Hsp_query-frame> <Hsp_hit-frame>1</Hsp_hit-frame> <Hsp_identity>336</Hsp_identity> <Hsp_positive>343</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>348</Hsp_align-len> <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_hseq> <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>18</Statistics_hsp-len> <Statistics_eff-space>109230</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> <Iteration> <Iteration_iter-num>20</Iteration_iter-num> <Iteration_query-ID>Query_4</Iteration_query-ID> <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> <Iteration_query-len>348</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_2</Hit_id> <Hit_def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Hit_def> <Hit_accession>Subject_2</Hit_accession> <Hit_len>1574</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>646.12</Hsp_bit-score> <Hsp_score>1489</Hsp_score> <Hsp_evalue>0</Hsp_evalue> <Hsp_query-from>1</Hsp_query-from> <Hsp_query-to>341</Hsp_query-to> <Hsp_hit-from>42</Hsp_hit-from> <Hsp_hit-to>1067</Hsp_hit-to> <Hsp_query-frame>0</Hsp_query-frame> <Hsp_hit-frame>3</Hsp_hit-frame> <Hsp_identity>290</Hsp_identity> <Hsp_positive>320</Hsp_positive> <Hsp_gaps>1</Hsp_gaps> <Hsp_align-len>342</Hsp_align-len> <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq> <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq> <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE</Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>18</Statistics_hsp-len> <Statistics_eff-space>109230</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> <Iteration> <Iteration_iter-num>21</Iteration_iter-num> <Iteration_query-ID>Query_4</Iteration_query-ID> <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> <Iteration_query-len>348</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_3</Hit_id> <Hit_def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Hit_def> <Hit_accession>Subject_3</Hit_accession> <Hit_len>4301</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>151.343</Hsp_bit-score> <Hsp_score>342</Hsp_score> <Hsp_evalue>1.39567e-72</Hsp_evalue> <Hsp_query-from>239</Hsp_query-from> <Hsp_query-to>312</Hsp_query-to> <Hsp_hit-from>3147</Hsp_hit-from> <Hsp_hit-to>3368</Hsp_hit-to> <Hsp_query-frame>0</Hsp_query-frame> <Hsp_hit-frame>3</Hsp_hit-frame> <Hsp_identity>69</Hsp_identity> <Hsp_positive>73</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>74</Hsp_align-len> <Hsp_qseq>ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_qseq> <Hsp_hseq>ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_hseq> <Hsp_midline>ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> </Hsp> <Hsp> <Hsp_num>2</Hsp_num> <Hsp_bit-score>126.324</Hsp_bit-score> <Hsp_score>284</Hsp_score> <Hsp_evalue>1.39567e-72</Hsp_evalue> <Hsp_query-from>177</Hsp_query-from> <Hsp_query-to>235</Hsp_query-to> <Hsp_hit-from>2855</Hsp_hit-from> <Hsp_hit-to>3031</Hsp_hit-to> <Hsp_query-frame>0</Hsp_query-frame> <Hsp_hit-frame>2</Hsp_hit-frame> <Hsp_identity>54</Hsp_identity> <Hsp_positive>57</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>59</Hsp_align-len> <Hsp_qseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_qseq> <Hsp_hseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_hseq> <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline> </Hsp> <Hsp> <Hsp_num>3</Hsp_num> <Hsp_bit-score>229.42</Hsp_bit-score> <Hsp_score>523</Hsp_score> <Hsp_evalue>9.34154e-67</Hsp_evalue> <Hsp_query-from>11</Hsp_query-from> <Hsp_query-to>121</Hsp_query-to> <Hsp_hit-from>1</Hsp_hit-from> <Hsp_hit-to>333</Hsp_hit-to> <Hsp_query-frame>0</Hsp_query-frame> <Hsp_hit-frame>1</Hsp_hit-frame> <Hsp_identity>107</Hsp_identity> <Hsp_positive>109</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>111</Hsp_align-len> <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq> <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> </Hsp> <Hsp> <Hsp_num>4</Hsp_num> <Hsp_bit-score>122.873</Hsp_bit-score> <Hsp_score>276</Hsp_score> <Hsp_evalue>1.03783e-32</Hsp_evalue> <Hsp_query-from>119</Hsp_query-from> <Hsp_query-to>177</Hsp_query-to> <Hsp_hit-from>1404</Hsp_hit-from> <Hsp_hit-to>1580</Hsp_hit-to> <Hsp_query-frame>0</Hsp_query-frame> <Hsp_hit-frame>3</Hsp_hit-frame> <Hsp_identity>55</Hsp_identity> <Hsp_positive>56</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>59</Hsp_align-len> <Hsp_qseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_qseq> <Hsp_hseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_hseq> <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> </Hsp> <Hsp> <Hsp_num>5</Hsp_num> <Hsp_bit-score>57.7368</Hsp_bit-score> <Hsp_score>125</Hsp_score> <Hsp_evalue>1.50808e-12</Hsp_evalue> <Hsp_query-from>312</Hsp_query-from> <Hsp_query-to>337</Hsp_query-to> <Hsp_hit-from>4222</Hsp_hit-from> <Hsp_hit-to>4299</Hsp_hit-to> <Hsp_query-frame>0</Hsp_query-frame> <Hsp_hit-frame>1</Hsp_hit-frame> <Hsp_identity>23</Hsp_identity> <Hsp_positive>24</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>26</Hsp_align-len> <Hsp_qseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_qseq> <Hsp_hseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_hseq> <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>18</Statistics_hsp-len> <Statistics_eff-space>109230</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> <Iteration> <Iteration_iter-num>22</Iteration_iter-num> <Iteration_query-ID>Query_4</Iteration_query-ID> <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> <Iteration_query-len>348</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_4</Hit_id> <Hit_def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Hit_def> <Hit_accession>Subject_4</Hit_accession> <Hit_len>983</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>658.198</Hsp_bit-score> <Hsp_score>1517</Hsp_score> <Hsp_evalue>0</Hsp_evalue> <Hsp_query-from>11</Hsp_query-from> <Hsp_query-to>336</Hsp_query-to> <Hsp_hit-from>1</Hsp_hit-from> <Hsp_hit-to>978</Hsp_hit-to> <Hsp_query-frame>0</Hsp_query-frame> <Hsp_hit-frame>1</Hsp_hit-frame> <Hsp_identity>310</Hsp_identity> <Hsp_positive>322</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>326</Hsp_align-len> <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_qseq> <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_hseq> <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>18</Statistics_hsp-len> <Statistics_eff-space>109230</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> <Iteration> <Iteration_iter-num>23</Iteration_iter-num> <Iteration_query-ID>Query_4</Iteration_query-ID> <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> <Iteration_query-len>348</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_5</Hit_id> <Hit_def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Hit_def> <Hit_accession>Subject_5</Hit_accession> <Hit_len>1047</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>711.256</Hsp_bit-score> <Hsp_score>1640</Hsp_score> <Hsp_evalue>0</Hsp_evalue> <Hsp_query-from>1</Hsp_query-from> <Hsp_query-to>348</Hsp_query-to> <Hsp_hit-from>1</Hsp_hit-from> <Hsp_hit-to>1044</Hsp_hit-to> <Hsp_query-frame>0</Hsp_query-frame> <Hsp_hit-frame>1</Hsp_hit-frame> <Hsp_identity>325</Hsp_identity> <Hsp_positive>337</Hsp_positive> <Hsp_gaps>0</Hsp_gaps> <Hsp_align-len>348</Hsp_align-len> <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq> <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>18</Statistics_hsp-len> <Statistics_eff-space>109230</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> <Iteration> <Iteration_iter-num>24</Iteration_iter-num> <Iteration_query-ID>Query_4</Iteration_query-ID> <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> <Iteration_query-len>348</Iteration_query-len> <Iteration_hits> <Hit> <Hit_num>1</Hit_num> <Hit_id>Subject_6</Hit_id> <Hit_def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Hit_def> <Hit_accession>Subject_6</Hit_accession> <Hit_len>1344</Hit_len> <Hit_hsps> <Hsp> <Hsp_num>1</Hsp_num> <Hsp_bit-score>626.708</Hsp_bit-score> <Hsp_score>1444</Hsp_score> <Hsp_evalue>0</Hsp_evalue> <Hsp_query-from>1</Hsp_query-from> <Hsp_query-to>341</Hsp_query-to> <Hsp_hit-from>23</Hsp_hit-from> <Hsp_hit-to>1048</Hsp_hit-to> <Hsp_query-frame>0</Hsp_query-frame> <Hsp_hit-frame>2</Hsp_hit-frame> <Hsp_identity>281</Hsp_identity> <Hsp_positive>311</Hsp_positive> <Hsp_gaps>1</Hsp_gaps> <Hsp_align-len>342</Hsp_align-len> <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE</Hsp_qseq> <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq> <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE</Hsp_midline> </Hsp> </Hit_hsps> </Hit> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>0</Statistics_db-num> <Statistics_db-len>0</Statistics_db-len> <Statistics_hsp-len>18</Statistics_hsp-len> <Statistics_eff-space>109230</Statistics_eff-space> <Statistics_kappa>0.071</Statistics_kappa> <Statistics_lambda>0.299</Statistics_lambda> <Statistics_entropy>0.27</Statistics_entropy> </Statistics> </Iteration_stat> </Iteration> </BlastOutput_iterations> </BlastOutput>