Mercurial > repos > devteam > ncbi_blast_plus
annotate test-data/tblastn_four_human_vs_rhodopsin.xml @ 10:70e7dcbf6573 draft
Uploaded v0.0.20, handles dependencies via package_blast_plus_2_2_26, development moved to GitHub, RST README, MIT licence, citation information, more tests, percentage identity option to BLASTN, cElementTree to ElementTree fallback.
| author | peterjc |
|---|---|
| date | Mon, 23 Sep 2013 06:14:13 -0400 |
| parents | 1f546099212f |
| children | 4c4a0da938ff |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
| 0 | 3 <BlastOutput> |
| 4 <BlastOutput_program>tblastn</BlastOutput_program> | |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
5 <BlastOutput_version>TBLASTN 2.2.26+</BlastOutput_version> |
| 0 | 6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> |
| 7 <BlastOutput_db></BlastOutput_db> | |
| 8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> | |
| 9 <BlastOutput_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def> | |
| 10 <BlastOutput_query-len>406</BlastOutput_query-len> | |
| 11 <BlastOutput_param> | |
| 12 <Parameters> | |
| 13 <Parameters_matrix>BLOSUM80</Parameters_matrix> | |
| 14 <Parameters_expect>1e-10</Parameters_expect> | |
| 15 <Parameters_gap-open>10</Parameters_gap-open> | |
| 16 <Parameters_gap-extend>1</Parameters_gap-extend> | |
| 17 <Parameters_filter>F</Parameters_filter> | |
| 18 </Parameters> | |
| 19 </BlastOutput_param> | |
| 20 <BlastOutput_iterations> | |
| 21 <Iteration> | |
| 22 <Iteration_iter-num>1</Iteration_iter-num> | |
| 23 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
| 24 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
| 25 <Iteration_query-len>406</Iteration_query-len> | |
| 26 <Iteration_hits></Iteration_hits> | |
| 27 <Iteration_stat> | |
| 28 <Statistics> | |
| 29 <Statistics_db-num>0</Statistics_db-num> | |
| 30 <Statistics_db-len>0</Statistics_db-len> | |
| 31 <Statistics_hsp-len>19</Statistics_hsp-len> | |
| 32 <Statistics_eff-space>127710</Statistics_eff-space> | |
| 33 <Statistics_kappa>0.071</Statistics_kappa> | |
| 34 <Statistics_lambda>0.299</Statistics_lambda> | |
| 35 <Statistics_entropy>0.27</Statistics_entropy> | |
| 36 </Statistics> | |
| 37 </Iteration_stat> | |
| 38 <Iteration_message>No hits found</Iteration_message> | |
| 39 </Iteration> | |
| 40 <Iteration> | |
| 41 <Iteration_iter-num>2</Iteration_iter-num> | |
| 42 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
| 43 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
| 44 <Iteration_query-len>406</Iteration_query-len> | |
| 45 <Iteration_hits></Iteration_hits> | |
| 46 <Iteration_stat> | |
| 47 <Statistics> | |
| 48 <Statistics_db-num>0</Statistics_db-num> | |
| 49 <Statistics_db-len>0</Statistics_db-len> | |
| 50 <Statistics_hsp-len>19</Statistics_hsp-len> | |
| 51 <Statistics_eff-space>127710</Statistics_eff-space> | |
| 52 <Statistics_kappa>0.071</Statistics_kappa> | |
| 53 <Statistics_lambda>0.299</Statistics_lambda> | |
| 54 <Statistics_entropy>0.27</Statistics_entropy> | |
| 55 </Statistics> | |
| 56 </Iteration_stat> | |
| 57 <Iteration_message>No hits found</Iteration_message> | |
| 58 </Iteration> | |
| 59 <Iteration> | |
| 60 <Iteration_iter-num>3</Iteration_iter-num> | |
| 61 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
| 62 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
| 63 <Iteration_query-len>406</Iteration_query-len> | |
| 64 <Iteration_hits></Iteration_hits> | |
| 65 <Iteration_stat> | |
| 66 <Statistics> | |
| 67 <Statistics_db-num>0</Statistics_db-num> | |
| 68 <Statistics_db-len>0</Statistics_db-len> | |
| 69 <Statistics_hsp-len>19</Statistics_hsp-len> | |
| 70 <Statistics_eff-space>127710</Statistics_eff-space> | |
| 71 <Statistics_kappa>0.071</Statistics_kappa> | |
| 72 <Statistics_lambda>0.299</Statistics_lambda> | |
| 73 <Statistics_entropy>0.27</Statistics_entropy> | |
| 74 </Statistics> | |
| 75 </Iteration_stat> | |
| 76 <Iteration_message>No hits found</Iteration_message> | |
| 77 </Iteration> | |
| 78 <Iteration> | |
| 79 <Iteration_iter-num>4</Iteration_iter-num> | |
| 80 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
| 81 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
| 82 <Iteration_query-len>406</Iteration_query-len> | |
| 83 <Iteration_hits></Iteration_hits> | |
| 84 <Iteration_stat> | |
| 85 <Statistics> | |
| 86 <Statistics_db-num>0</Statistics_db-num> | |
| 87 <Statistics_db-len>0</Statistics_db-len> | |
| 88 <Statistics_hsp-len>19</Statistics_hsp-len> | |
| 89 <Statistics_eff-space>127710</Statistics_eff-space> | |
| 90 <Statistics_kappa>0.071</Statistics_kappa> | |
| 91 <Statistics_lambda>0.299</Statistics_lambda> | |
| 92 <Statistics_entropy>0.27</Statistics_entropy> | |
| 93 </Statistics> | |
| 94 </Iteration_stat> | |
| 95 <Iteration_message>No hits found</Iteration_message> | |
| 96 </Iteration> | |
| 97 <Iteration> | |
| 98 <Iteration_iter-num>5</Iteration_iter-num> | |
| 99 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
| 100 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
| 101 <Iteration_query-len>406</Iteration_query-len> | |
| 102 <Iteration_hits></Iteration_hits> | |
| 103 <Iteration_stat> | |
| 104 <Statistics> | |
| 105 <Statistics_db-num>0</Statistics_db-num> | |
| 106 <Statistics_db-len>0</Statistics_db-len> | |
| 107 <Statistics_hsp-len>19</Statistics_hsp-len> | |
| 108 <Statistics_eff-space>127710</Statistics_eff-space> | |
| 109 <Statistics_kappa>0.071</Statistics_kappa> | |
| 110 <Statistics_lambda>0.299</Statistics_lambda> | |
| 111 <Statistics_entropy>0.27</Statistics_entropy> | |
| 112 </Statistics> | |
| 113 </Iteration_stat> | |
| 114 <Iteration_message>No hits found</Iteration_message> | |
| 115 </Iteration> | |
| 116 <Iteration> | |
| 117 <Iteration_iter-num>6</Iteration_iter-num> | |
| 118 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
| 119 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
| 120 <Iteration_query-len>406</Iteration_query-len> | |
| 121 <Iteration_hits></Iteration_hits> | |
| 122 <Iteration_stat> | |
| 123 <Statistics> | |
| 124 <Statistics_db-num>0</Statistics_db-num> | |
| 125 <Statistics_db-len>0</Statistics_db-len> | |
| 126 <Statistics_hsp-len>19</Statistics_hsp-len> | |
| 127 <Statistics_eff-space>127710</Statistics_eff-space> | |
| 128 <Statistics_kappa>0.071</Statistics_kappa> | |
| 129 <Statistics_lambda>0.299</Statistics_lambda> | |
| 130 <Statistics_entropy>0.27</Statistics_entropy> | |
| 131 </Statistics> | |
| 132 </Iteration_stat> | |
| 133 <Iteration_message>No hits found</Iteration_message> | |
| 134 </Iteration> | |
| 135 <Iteration> | |
| 136 <Iteration_iter-num>7</Iteration_iter-num> | |
| 137 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
| 138 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
| 139 <Iteration_query-len>1161</Iteration_query-len> | |
| 140 <Iteration_hits></Iteration_hits> | |
| 141 <Iteration_stat> | |
| 142 <Statistics> | |
| 143 <Statistics_db-num>0</Statistics_db-num> | |
| 144 <Statistics_db-len>0</Statistics_db-len> | |
| 145 <Statistics_hsp-len>23</Statistics_hsp-len> | |
| 146 <Statistics_eff-space>370988</Statistics_eff-space> | |
| 147 <Statistics_kappa>0.071</Statistics_kappa> | |
| 148 <Statistics_lambda>0.299</Statistics_lambda> | |
| 149 <Statistics_entropy>0.27</Statistics_entropy> | |
| 150 </Statistics> | |
| 151 </Iteration_stat> | |
| 152 <Iteration_message>No hits found</Iteration_message> | |
| 153 </Iteration> | |
| 154 <Iteration> | |
| 155 <Iteration_iter-num>8</Iteration_iter-num> | |
| 156 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
| 157 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
| 158 <Iteration_query-len>1161</Iteration_query-len> | |
| 159 <Iteration_hits></Iteration_hits> | |
| 160 <Iteration_stat> | |
| 161 <Statistics> | |
| 162 <Statistics_db-num>0</Statistics_db-num> | |
| 163 <Statistics_db-len>0</Statistics_db-len> | |
| 164 <Statistics_hsp-len>23</Statistics_hsp-len> | |
| 165 <Statistics_eff-space>370988</Statistics_eff-space> | |
| 166 <Statistics_kappa>0.071</Statistics_kappa> | |
| 167 <Statistics_lambda>0.299</Statistics_lambda> | |
| 168 <Statistics_entropy>0.27</Statistics_entropy> | |
| 169 </Statistics> | |
| 170 </Iteration_stat> | |
| 171 <Iteration_message>No hits found</Iteration_message> | |
| 172 </Iteration> | |
| 173 <Iteration> | |
| 174 <Iteration_iter-num>9</Iteration_iter-num> | |
| 175 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
| 176 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
| 177 <Iteration_query-len>1161</Iteration_query-len> | |
| 178 <Iteration_hits></Iteration_hits> | |
| 179 <Iteration_stat> | |
| 180 <Statistics> | |
| 181 <Statistics_db-num>0</Statistics_db-num> | |
| 182 <Statistics_db-len>0</Statistics_db-len> | |
| 183 <Statistics_hsp-len>23</Statistics_hsp-len> | |
| 184 <Statistics_eff-space>370988</Statistics_eff-space> | |
| 185 <Statistics_kappa>0.071</Statistics_kappa> | |
| 186 <Statistics_lambda>0.299</Statistics_lambda> | |
| 187 <Statistics_entropy>0.27</Statistics_entropy> | |
| 188 </Statistics> | |
| 189 </Iteration_stat> | |
| 190 <Iteration_message>No hits found</Iteration_message> | |
| 191 </Iteration> | |
| 192 <Iteration> | |
| 193 <Iteration_iter-num>10</Iteration_iter-num> | |
| 194 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
| 195 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
| 196 <Iteration_query-len>1161</Iteration_query-len> | |
| 197 <Iteration_hits></Iteration_hits> | |
| 198 <Iteration_stat> | |
| 199 <Statistics> | |
| 200 <Statistics_db-num>0</Statistics_db-num> | |
| 201 <Statistics_db-len>0</Statistics_db-len> | |
| 202 <Statistics_hsp-len>23</Statistics_hsp-len> | |
| 203 <Statistics_eff-space>370988</Statistics_eff-space> | |
| 204 <Statistics_kappa>0.071</Statistics_kappa> | |
| 205 <Statistics_lambda>0.299</Statistics_lambda> | |
| 206 <Statistics_entropy>0.27</Statistics_entropy> | |
| 207 </Statistics> | |
| 208 </Iteration_stat> | |
| 209 <Iteration_message>No hits found</Iteration_message> | |
| 210 </Iteration> | |
| 211 <Iteration> | |
| 212 <Iteration_iter-num>11</Iteration_iter-num> | |
| 213 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
| 214 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
| 215 <Iteration_query-len>1161</Iteration_query-len> | |
| 216 <Iteration_hits></Iteration_hits> | |
| 217 <Iteration_stat> | |
| 218 <Statistics> | |
| 219 <Statistics_db-num>0</Statistics_db-num> | |
| 220 <Statistics_db-len>0</Statistics_db-len> | |
| 221 <Statistics_hsp-len>23</Statistics_hsp-len> | |
| 222 <Statistics_eff-space>370988</Statistics_eff-space> | |
| 223 <Statistics_kappa>0.071</Statistics_kappa> | |
| 224 <Statistics_lambda>0.299</Statistics_lambda> | |
| 225 <Statistics_entropy>0.27</Statistics_entropy> | |
| 226 </Statistics> | |
| 227 </Iteration_stat> | |
| 228 <Iteration_message>No hits found</Iteration_message> | |
| 229 </Iteration> | |
| 230 <Iteration> | |
| 231 <Iteration_iter-num>12</Iteration_iter-num> | |
| 232 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
| 233 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
| 234 <Iteration_query-len>1161</Iteration_query-len> | |
| 235 <Iteration_hits></Iteration_hits> | |
| 236 <Iteration_stat> | |
| 237 <Statistics> | |
| 238 <Statistics_db-num>0</Statistics_db-num> | |
| 239 <Statistics_db-len>0</Statistics_db-len> | |
| 240 <Statistics_hsp-len>23</Statistics_hsp-len> | |
| 241 <Statistics_eff-space>370988</Statistics_eff-space> | |
| 242 <Statistics_kappa>0.071</Statistics_kappa> | |
| 243 <Statistics_lambda>0.299</Statistics_lambda> | |
| 244 <Statistics_entropy>0.27</Statistics_entropy> | |
| 245 </Statistics> | |
| 246 </Iteration_stat> | |
| 247 <Iteration_message>No hits found</Iteration_message> | |
| 248 </Iteration> | |
| 249 <Iteration> | |
| 250 <Iteration_iter-num>13</Iteration_iter-num> | |
| 251 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
| 252 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
| 253 <Iteration_query-len>1382</Iteration_query-len> | |
| 254 <Iteration_hits></Iteration_hits> | |
| 255 <Iteration_stat> | |
| 256 <Statistics> | |
| 257 <Statistics_db-num>0</Statistics_db-num> | |
| 258 <Statistics_db-len>0</Statistics_db-len> | |
| 259 <Statistics_hsp-len>24</Statistics_hsp-len> | |
| 260 <Statistics_eff-space>441350</Statistics_eff-space> | |
| 261 <Statistics_kappa>0.071</Statistics_kappa> | |
| 262 <Statistics_lambda>0.299</Statistics_lambda> | |
| 263 <Statistics_entropy>0.27</Statistics_entropy> | |
| 264 </Statistics> | |
| 265 </Iteration_stat> | |
| 266 <Iteration_message>No hits found</Iteration_message> | |
| 267 </Iteration> | |
| 268 <Iteration> | |
| 269 <Iteration_iter-num>14</Iteration_iter-num> | |
| 270 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
| 271 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
| 272 <Iteration_query-len>1382</Iteration_query-len> | |
| 273 <Iteration_hits></Iteration_hits> | |
| 274 <Iteration_stat> | |
| 275 <Statistics> | |
| 276 <Statistics_db-num>0</Statistics_db-num> | |
| 277 <Statistics_db-len>0</Statistics_db-len> | |
| 278 <Statistics_hsp-len>24</Statistics_hsp-len> | |
| 279 <Statistics_eff-space>441350</Statistics_eff-space> | |
| 280 <Statistics_kappa>0.071</Statistics_kappa> | |
| 281 <Statistics_lambda>0.299</Statistics_lambda> | |
| 282 <Statistics_entropy>0.27</Statistics_entropy> | |
| 283 </Statistics> | |
| 284 </Iteration_stat> | |
| 285 <Iteration_message>No hits found</Iteration_message> | |
| 286 </Iteration> | |
| 287 <Iteration> | |
| 288 <Iteration_iter-num>15</Iteration_iter-num> | |
| 289 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
| 290 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
| 291 <Iteration_query-len>1382</Iteration_query-len> | |
| 292 <Iteration_hits></Iteration_hits> | |
| 293 <Iteration_stat> | |
| 294 <Statistics> | |
| 295 <Statistics_db-num>0</Statistics_db-num> | |
| 296 <Statistics_db-len>0</Statistics_db-len> | |
| 297 <Statistics_hsp-len>24</Statistics_hsp-len> | |
| 298 <Statistics_eff-space>441350</Statistics_eff-space> | |
| 299 <Statistics_kappa>0.071</Statistics_kappa> | |
| 300 <Statistics_lambda>0.299</Statistics_lambda> | |
| 301 <Statistics_entropy>0.27</Statistics_entropy> | |
| 302 </Statistics> | |
| 303 </Iteration_stat> | |
| 304 <Iteration_message>No hits found</Iteration_message> | |
| 305 </Iteration> | |
| 306 <Iteration> | |
| 307 <Iteration_iter-num>16</Iteration_iter-num> | |
| 308 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
| 309 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
| 310 <Iteration_query-len>1382</Iteration_query-len> | |
| 311 <Iteration_hits></Iteration_hits> | |
| 312 <Iteration_stat> | |
| 313 <Statistics> | |
| 314 <Statistics_db-num>0</Statistics_db-num> | |
| 315 <Statistics_db-len>0</Statistics_db-len> | |
| 316 <Statistics_hsp-len>24</Statistics_hsp-len> | |
| 317 <Statistics_eff-space>441350</Statistics_eff-space> | |
| 318 <Statistics_kappa>0.071</Statistics_kappa> | |
| 319 <Statistics_lambda>0.299</Statistics_lambda> | |
| 320 <Statistics_entropy>0.27</Statistics_entropy> | |
| 321 </Statistics> | |
| 322 </Iteration_stat> | |
| 323 <Iteration_message>No hits found</Iteration_message> | |
| 324 </Iteration> | |
| 325 <Iteration> | |
| 326 <Iteration_iter-num>17</Iteration_iter-num> | |
| 327 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
| 328 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
| 329 <Iteration_query-len>1382</Iteration_query-len> | |
| 330 <Iteration_hits></Iteration_hits> | |
| 331 <Iteration_stat> | |
| 332 <Statistics> | |
| 333 <Statistics_db-num>0</Statistics_db-num> | |
| 334 <Statistics_db-len>0</Statistics_db-len> | |
| 335 <Statistics_hsp-len>24</Statistics_hsp-len> | |
| 336 <Statistics_eff-space>441350</Statistics_eff-space> | |
| 337 <Statistics_kappa>0.071</Statistics_kappa> | |
| 338 <Statistics_lambda>0.299</Statistics_lambda> | |
| 339 <Statistics_entropy>0.27</Statistics_entropy> | |
| 340 </Statistics> | |
| 341 </Iteration_stat> | |
| 342 <Iteration_message>No hits found</Iteration_message> | |
| 343 </Iteration> | |
| 344 <Iteration> | |
| 345 <Iteration_iter-num>18</Iteration_iter-num> | |
| 346 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
| 347 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
| 348 <Iteration_query-len>1382</Iteration_query-len> | |
| 349 <Iteration_hits></Iteration_hits> | |
| 350 <Iteration_stat> | |
| 351 <Statistics> | |
| 352 <Statistics_db-num>0</Statistics_db-num> | |
| 353 <Statistics_db-len>0</Statistics_db-len> | |
| 354 <Statistics_hsp-len>24</Statistics_hsp-len> | |
| 355 <Statistics_eff-space>441350</Statistics_eff-space> | |
| 356 <Statistics_kappa>0.071</Statistics_kappa> | |
| 357 <Statistics_lambda>0.299</Statistics_lambda> | |
| 358 <Statistics_entropy>0.27</Statistics_entropy> | |
| 359 </Statistics> | |
| 360 </Iteration_stat> | |
| 361 <Iteration_message>No hits found</Iteration_message> | |
| 362 </Iteration> | |
| 363 <Iteration> | |
| 364 <Iteration_iter-num>19</Iteration_iter-num> | |
| 365 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
| 366 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
| 367 <Iteration_query-len>348</Iteration_query-len> | |
| 368 <Iteration_hits> | |
| 369 <Hit> | |
| 370 <Hit_num>1</Hit_num> | |
| 371 <Hit_id>Subject_1</Hit_id> | |
| 372 <Hit_def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Hit_def> | |
| 373 <Hit_accession>Subject_1</Hit_accession> | |
| 374 <Hit_len>1047</Hit_len> | |
| 375 <Hit_hsps> | |
| 376 <Hsp> | |
| 377 <Hsp_num>1</Hsp_num> | |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
378 <Hsp_bit-score>732.393</Hsp_bit-score> |
| 0 | 379 <Hsp_score>1689</Hsp_score> |
| 380 <Hsp_evalue>0</Hsp_evalue> | |
| 381 <Hsp_query-from>1</Hsp_query-from> | |
| 382 <Hsp_query-to>348</Hsp_query-to> | |
| 383 <Hsp_hit-from>1</Hsp_hit-from> | |
| 384 <Hsp_hit-to>1044</Hsp_hit-to> | |
| 385 <Hsp_query-frame>0</Hsp_query-frame> | |
| 386 <Hsp_hit-frame>1</Hsp_hit-frame> | |
| 387 <Hsp_identity>336</Hsp_identity> | |
| 388 <Hsp_positive>343</Hsp_positive> | |
| 389 <Hsp_gaps>0</Hsp_gaps> | |
| 390 <Hsp_align-len>348</Hsp_align-len> | |
| 391 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> | |
| 392 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_hseq> | |
| 393 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> | |
| 394 </Hsp> | |
| 395 </Hit_hsps> | |
| 396 </Hit> | |
| 397 </Iteration_hits> | |
| 398 <Iteration_stat> | |
| 399 <Statistics> | |
| 400 <Statistics_db-num>0</Statistics_db-num> | |
| 401 <Statistics_db-len>0</Statistics_db-len> | |
| 402 <Statistics_hsp-len>18</Statistics_hsp-len> | |
| 403 <Statistics_eff-space>109230</Statistics_eff-space> | |
| 404 <Statistics_kappa>0.071</Statistics_kappa> | |
| 405 <Statistics_lambda>0.299</Statistics_lambda> | |
| 406 <Statistics_entropy>0.27</Statistics_entropy> | |
| 407 </Statistics> | |
| 408 </Iteration_stat> | |
| 409 </Iteration> | |
| 410 <Iteration> | |
| 411 <Iteration_iter-num>20</Iteration_iter-num> | |
| 412 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
| 413 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
| 414 <Iteration_query-len>348</Iteration_query-len> | |
| 415 <Iteration_hits> | |
| 416 <Hit> | |
| 417 <Hit_num>1</Hit_num> | |
| 418 <Hit_id>Subject_2</Hit_id> | |
| 419 <Hit_def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Hit_def> | |
| 420 <Hit_accession>Subject_2</Hit_accession> | |
| 421 <Hit_len>1574</Hit_len> | |
| 422 <Hit_hsps> | |
| 423 <Hsp> | |
| 424 <Hsp_num>1</Hsp_num> | |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
425 <Hsp_bit-score>646.12</Hsp_bit-score> |
| 0 | 426 <Hsp_score>1489</Hsp_score> |
| 427 <Hsp_evalue>0</Hsp_evalue> | |
| 428 <Hsp_query-from>1</Hsp_query-from> | |
| 429 <Hsp_query-to>341</Hsp_query-to> | |
| 430 <Hsp_hit-from>42</Hsp_hit-from> | |
| 431 <Hsp_hit-to>1067</Hsp_hit-to> | |
| 432 <Hsp_query-frame>0</Hsp_query-frame> | |
| 433 <Hsp_hit-frame>3</Hsp_hit-frame> | |
| 434 <Hsp_identity>290</Hsp_identity> | |
| 435 <Hsp_positive>320</Hsp_positive> | |
| 436 <Hsp_gaps>1</Hsp_gaps> | |
| 437 <Hsp_align-len>342</Hsp_align-len> | |
| 438 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq> | |
| 439 <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq> | |
| 440 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE</Hsp_midline> | |
| 441 </Hsp> | |
| 442 </Hit_hsps> | |
| 443 </Hit> | |
| 444 </Iteration_hits> | |
| 445 <Iteration_stat> | |
| 446 <Statistics> | |
| 447 <Statistics_db-num>0</Statistics_db-num> | |
| 448 <Statistics_db-len>0</Statistics_db-len> | |
| 449 <Statistics_hsp-len>18</Statistics_hsp-len> | |
| 450 <Statistics_eff-space>109230</Statistics_eff-space> | |
| 451 <Statistics_kappa>0.071</Statistics_kappa> | |
| 452 <Statistics_lambda>0.299</Statistics_lambda> | |
| 453 <Statistics_entropy>0.27</Statistics_entropy> | |
| 454 </Statistics> | |
| 455 </Iteration_stat> | |
| 456 </Iteration> | |
| 457 <Iteration> | |
| 458 <Iteration_iter-num>21</Iteration_iter-num> | |
| 459 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
| 460 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
| 461 <Iteration_query-len>348</Iteration_query-len> | |
| 462 <Iteration_hits> | |
| 463 <Hit> | |
| 464 <Hit_num>1</Hit_num> | |
| 465 <Hit_id>Subject_3</Hit_id> | |
| 466 <Hit_def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Hit_def> | |
| 467 <Hit_accession>Subject_3</Hit_accession> | |
| 468 <Hit_len>4301</Hit_len> | |
| 469 <Hit_hsps> | |
| 470 <Hsp> | |
| 471 <Hsp_num>1</Hsp_num> | |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
472 <Hsp_bit-score>151.343</Hsp_bit-score> |
| 0 | 473 <Hsp_score>342</Hsp_score> |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
474 <Hsp_evalue>1.39567e-72</Hsp_evalue> |
| 0 | 475 <Hsp_query-from>239</Hsp_query-from> |
| 476 <Hsp_query-to>312</Hsp_query-to> | |
| 477 <Hsp_hit-from>3147</Hsp_hit-from> | |
| 478 <Hsp_hit-to>3368</Hsp_hit-to> | |
| 479 <Hsp_query-frame>0</Hsp_query-frame> | |
| 480 <Hsp_hit-frame>3</Hsp_hit-frame> | |
| 481 <Hsp_identity>69</Hsp_identity> | |
| 482 <Hsp_positive>73</Hsp_positive> | |
| 483 <Hsp_gaps>0</Hsp_gaps> | |
| 484 <Hsp_align-len>74</Hsp_align-len> | |
| 485 <Hsp_qseq>ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_qseq> | |
| 486 <Hsp_hseq>ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_hseq> | |
| 487 <Hsp_midline>ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> | |
| 488 </Hsp> | |
| 489 <Hsp> | |
| 490 <Hsp_num>2</Hsp_num> | |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
491 <Hsp_bit-score>126.324</Hsp_bit-score> |
| 0 | 492 <Hsp_score>284</Hsp_score> |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
493 <Hsp_evalue>1.39567e-72</Hsp_evalue> |
| 0 | 494 <Hsp_query-from>177</Hsp_query-from> |
| 495 <Hsp_query-to>235</Hsp_query-to> | |
| 496 <Hsp_hit-from>2855</Hsp_hit-from> | |
| 497 <Hsp_hit-to>3031</Hsp_hit-to> | |
| 498 <Hsp_query-frame>0</Hsp_query-frame> | |
| 499 <Hsp_hit-frame>2</Hsp_hit-frame> | |
| 500 <Hsp_identity>54</Hsp_identity> | |
| 501 <Hsp_positive>57</Hsp_positive> | |
| 502 <Hsp_gaps>0</Hsp_gaps> | |
| 503 <Hsp_align-len>59</Hsp_align-len> | |
| 504 <Hsp_qseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_qseq> | |
| 505 <Hsp_hseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_hseq> | |
| 506 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline> | |
| 507 </Hsp> | |
| 508 <Hsp> | |
| 509 <Hsp_num>3</Hsp_num> | |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
510 <Hsp_bit-score>229.42</Hsp_bit-score> |
| 0 | 511 <Hsp_score>523</Hsp_score> |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
512 <Hsp_evalue>9.34154e-67</Hsp_evalue> |
| 0 | 513 <Hsp_query-from>11</Hsp_query-from> |
| 514 <Hsp_query-to>121</Hsp_query-to> | |
| 515 <Hsp_hit-from>1</Hsp_hit-from> | |
| 516 <Hsp_hit-to>333</Hsp_hit-to> | |
| 517 <Hsp_query-frame>0</Hsp_query-frame> | |
| 518 <Hsp_hit-frame>1</Hsp_hit-frame> | |
| 519 <Hsp_identity>107</Hsp_identity> | |
| 520 <Hsp_positive>109</Hsp_positive> | |
| 521 <Hsp_gaps>0</Hsp_gaps> | |
| 522 <Hsp_align-len>111</Hsp_align-len> | |
| 523 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq> | |
| 524 <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> | |
| 525 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> | |
| 526 </Hsp> | |
| 527 <Hsp> | |
| 528 <Hsp_num>4</Hsp_num> | |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
529 <Hsp_bit-score>122.873</Hsp_bit-score> |
| 0 | 530 <Hsp_score>276</Hsp_score> |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
531 <Hsp_evalue>1.03783e-32</Hsp_evalue> |
| 0 | 532 <Hsp_query-from>119</Hsp_query-from> |
| 533 <Hsp_query-to>177</Hsp_query-to> | |
| 534 <Hsp_hit-from>1404</Hsp_hit-from> | |
| 535 <Hsp_hit-to>1580</Hsp_hit-to> | |
| 536 <Hsp_query-frame>0</Hsp_query-frame> | |
| 537 <Hsp_hit-frame>3</Hsp_hit-frame> | |
| 538 <Hsp_identity>55</Hsp_identity> | |
| 539 <Hsp_positive>56</Hsp_positive> | |
| 540 <Hsp_gaps>0</Hsp_gaps> | |
| 541 <Hsp_align-len>59</Hsp_align-len> | |
| 542 <Hsp_qseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_qseq> | |
| 543 <Hsp_hseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_hseq> | |
| 544 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> | |
| 545 </Hsp> | |
| 546 <Hsp> | |
| 547 <Hsp_num>5</Hsp_num> | |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
548 <Hsp_bit-score>57.7368</Hsp_bit-score> |
| 0 | 549 <Hsp_score>125</Hsp_score> |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
550 <Hsp_evalue>1.50808e-12</Hsp_evalue> |
| 0 | 551 <Hsp_query-from>312</Hsp_query-from> |
| 552 <Hsp_query-to>337</Hsp_query-to> | |
| 553 <Hsp_hit-from>4222</Hsp_hit-from> | |
| 554 <Hsp_hit-to>4299</Hsp_hit-to> | |
| 555 <Hsp_query-frame>0</Hsp_query-frame> | |
| 556 <Hsp_hit-frame>1</Hsp_hit-frame> | |
| 557 <Hsp_identity>23</Hsp_identity> | |
| 558 <Hsp_positive>24</Hsp_positive> | |
| 559 <Hsp_gaps>0</Hsp_gaps> | |
| 560 <Hsp_align-len>26</Hsp_align-len> | |
| 561 <Hsp_qseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_qseq> | |
| 562 <Hsp_hseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_hseq> | |
| 563 <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline> | |
| 564 </Hsp> | |
| 565 </Hit_hsps> | |
| 566 </Hit> | |
| 567 </Iteration_hits> | |
| 568 <Iteration_stat> | |
| 569 <Statistics> | |
| 570 <Statistics_db-num>0</Statistics_db-num> | |
| 571 <Statistics_db-len>0</Statistics_db-len> | |
| 572 <Statistics_hsp-len>18</Statistics_hsp-len> | |
| 573 <Statistics_eff-space>109230</Statistics_eff-space> | |
| 574 <Statistics_kappa>0.071</Statistics_kappa> | |
| 575 <Statistics_lambda>0.299</Statistics_lambda> | |
| 576 <Statistics_entropy>0.27</Statistics_entropy> | |
| 577 </Statistics> | |
| 578 </Iteration_stat> | |
| 579 </Iteration> | |
| 580 <Iteration> | |
| 581 <Iteration_iter-num>22</Iteration_iter-num> | |
| 582 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
| 583 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
| 584 <Iteration_query-len>348</Iteration_query-len> | |
| 585 <Iteration_hits> | |
| 586 <Hit> | |
| 587 <Hit_num>1</Hit_num> | |
| 588 <Hit_id>Subject_4</Hit_id> | |
| 589 <Hit_def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Hit_def> | |
| 590 <Hit_accession>Subject_4</Hit_accession> | |
| 591 <Hit_len>983</Hit_len> | |
| 592 <Hit_hsps> | |
| 593 <Hsp> | |
| 594 <Hsp_num>1</Hsp_num> | |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
595 <Hsp_bit-score>658.198</Hsp_bit-score> |
| 0 | 596 <Hsp_score>1517</Hsp_score> |
| 597 <Hsp_evalue>0</Hsp_evalue> | |
| 598 <Hsp_query-from>11</Hsp_query-from> | |
| 599 <Hsp_query-to>336</Hsp_query-to> | |
| 600 <Hsp_hit-from>1</Hsp_hit-from> | |
| 601 <Hsp_hit-to>978</Hsp_hit-to> | |
| 602 <Hsp_query-frame>0</Hsp_query-frame> | |
| 603 <Hsp_hit-frame>1</Hsp_hit-frame> | |
| 604 <Hsp_identity>310</Hsp_identity> | |
| 605 <Hsp_positive>322</Hsp_positive> | |
| 606 <Hsp_gaps>0</Hsp_gaps> | |
| 607 <Hsp_align-len>326</Hsp_align-len> | |
| 608 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_qseq> | |
| 609 <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_hseq> | |
| 610 <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> | |
| 611 </Hsp> | |
| 612 </Hit_hsps> | |
| 613 </Hit> | |
| 614 </Iteration_hits> | |
| 615 <Iteration_stat> | |
| 616 <Statistics> | |
| 617 <Statistics_db-num>0</Statistics_db-num> | |
| 618 <Statistics_db-len>0</Statistics_db-len> | |
| 619 <Statistics_hsp-len>18</Statistics_hsp-len> | |
| 620 <Statistics_eff-space>109230</Statistics_eff-space> | |
| 621 <Statistics_kappa>0.071</Statistics_kappa> | |
| 622 <Statistics_lambda>0.299</Statistics_lambda> | |
| 623 <Statistics_entropy>0.27</Statistics_entropy> | |
| 624 </Statistics> | |
| 625 </Iteration_stat> | |
| 626 </Iteration> | |
| 627 <Iteration> | |
| 628 <Iteration_iter-num>23</Iteration_iter-num> | |
| 629 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
| 630 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
| 631 <Iteration_query-len>348</Iteration_query-len> | |
| 632 <Iteration_hits> | |
| 633 <Hit> | |
| 634 <Hit_num>1</Hit_num> | |
| 635 <Hit_id>Subject_5</Hit_id> | |
| 636 <Hit_def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Hit_def> | |
| 637 <Hit_accession>Subject_5</Hit_accession> | |
| 638 <Hit_len>1047</Hit_len> | |
| 639 <Hit_hsps> | |
| 640 <Hsp> | |
| 641 <Hsp_num>1</Hsp_num> | |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
642 <Hsp_bit-score>711.256</Hsp_bit-score> |
| 0 | 643 <Hsp_score>1640</Hsp_score> |
| 644 <Hsp_evalue>0</Hsp_evalue> | |
| 645 <Hsp_query-from>1</Hsp_query-from> | |
| 646 <Hsp_query-to>348</Hsp_query-to> | |
| 647 <Hsp_hit-from>1</Hsp_hit-from> | |
| 648 <Hsp_hit-to>1044</Hsp_hit-to> | |
| 649 <Hsp_query-frame>0</Hsp_query-frame> | |
| 650 <Hsp_hit-frame>1</Hsp_hit-frame> | |
| 651 <Hsp_identity>325</Hsp_identity> | |
| 652 <Hsp_positive>337</Hsp_positive> | |
| 653 <Hsp_gaps>0</Hsp_gaps> | |
| 654 <Hsp_align-len>348</Hsp_align-len> | |
| 655 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> | |
| 656 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq> | |
| 657 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> | |
| 658 </Hsp> | |
| 659 </Hit_hsps> | |
| 660 </Hit> | |
| 661 </Iteration_hits> | |
| 662 <Iteration_stat> | |
| 663 <Statistics> | |
| 664 <Statistics_db-num>0</Statistics_db-num> | |
| 665 <Statistics_db-len>0</Statistics_db-len> | |
| 666 <Statistics_hsp-len>18</Statistics_hsp-len> | |
| 667 <Statistics_eff-space>109230</Statistics_eff-space> | |
| 668 <Statistics_kappa>0.071</Statistics_kappa> | |
| 669 <Statistics_lambda>0.299</Statistics_lambda> | |
| 670 <Statistics_entropy>0.27</Statistics_entropy> | |
| 671 </Statistics> | |
| 672 </Iteration_stat> | |
| 673 </Iteration> | |
| 674 <Iteration> | |
| 675 <Iteration_iter-num>24</Iteration_iter-num> | |
| 676 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
| 677 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
| 678 <Iteration_query-len>348</Iteration_query-len> | |
| 679 <Iteration_hits> | |
| 680 <Hit> | |
| 681 <Hit_num>1</Hit_num> | |
| 682 <Hit_id>Subject_6</Hit_id> | |
| 683 <Hit_def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Hit_def> | |
| 684 <Hit_accession>Subject_6</Hit_accession> | |
| 685 <Hit_len>1344</Hit_len> | |
| 686 <Hit_hsps> | |
| 687 <Hsp> | |
| 688 <Hsp_num>1</Hsp_num> | |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
689 <Hsp_bit-score>626.708</Hsp_bit-score> |
| 0 | 690 <Hsp_score>1444</Hsp_score> |
| 691 <Hsp_evalue>0</Hsp_evalue> | |
| 692 <Hsp_query-from>1</Hsp_query-from> | |
| 693 <Hsp_query-to>341</Hsp_query-to> | |
| 694 <Hsp_hit-from>23</Hsp_hit-from> | |
| 695 <Hsp_hit-to>1048</Hsp_hit-to> | |
| 696 <Hsp_query-frame>0</Hsp_query-frame> | |
| 697 <Hsp_hit-frame>2</Hsp_hit-frame> | |
| 698 <Hsp_identity>281</Hsp_identity> | |
| 699 <Hsp_positive>311</Hsp_positive> | |
| 700 <Hsp_gaps>1</Hsp_gaps> | |
| 701 <Hsp_align-len>342</Hsp_align-len> | |
| 702 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE</Hsp_qseq> | |
| 703 <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq> | |
| 704 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE</Hsp_midline> | |
| 705 </Hsp> | |
| 706 </Hit_hsps> | |
| 707 </Hit> | |
| 708 </Iteration_hits> | |
| 709 <Iteration_stat> | |
| 710 <Statistics> | |
| 711 <Statistics_db-num>0</Statistics_db-num> | |
| 712 <Statistics_db-len>0</Statistics_db-len> | |
| 713 <Statistics_hsp-len>18</Statistics_hsp-len> | |
| 714 <Statistics_eff-space>109230</Statistics_eff-space> | |
| 715 <Statistics_kappa>0.071</Statistics_kappa> | |
| 716 <Statistics_lambda>0.299</Statistics_lambda> | |
| 717 <Statistics_entropy>0.27</Statistics_entropy> | |
| 718 </Statistics> | |
| 719 </Iteration_stat> | |
| 720 </Iteration> | |
| 721 </BlastOutput_iterations> | |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
722 </BlastOutput> |