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annotate tool_dependencies.xml @ 0:017a00c265f1 draft default tip

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Imported from capsule None
author devteam
date Mon, 27 Jan 2014 09:25:09 -0500
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="bowtie2" version="2.1.0">
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4 <install version="1.0">
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5 <actions_group>
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6 <actions os="linux" architecture="x86_64">
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7 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/bowtie2/bowtie2-2.1.0-linux-x86_64.tgz</action>
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8 <action type="move_directory_files">
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9 <source_directory>.</source_directory>
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10 <destination_directory>$INSTALL_DIR</destination_directory>
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11 </action>
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12 </actions>
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13 <actions os="darwin" architecture="x86_64">
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14 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/bowtie2/bowtie2-2.1.0-macos-x86_64.tgz</action>
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15 <action type="move_directory_files">
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16 <source_directory>.</source_directory>
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17 <destination_directory>$INSTALL_DIR</destination_directory>
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18 </action>
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19 </actions>
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20 <actions os="linux" architecture="i386">
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21 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/i386/bowtie2/bowtie2-2.1.0-linux-i386.tgz</action>
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22 <action type="move_directory_files">
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23 <source_directory>.</source_directory>
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24 <destination_directory>$INSTALL_DIR</destination_directory>
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25 </action>
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26 </actions>
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27 <actions os="darwin" architecture="i386">
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28 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/i386/bowtie2/bowtie2-2.1.0-macos-i386.tgz</action>
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29 <action type="move_directory_files">
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30 <source_directory>.</source_directory>
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31 <destination_directory>$INSTALL_DIR</destination_directory>
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32 </action>
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33 </actions>
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34 <actions>
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35 <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.1.0/bowtie2-2.1.0-source.zip</action>
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36 <action type="shell_command">make</action>
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37 <action type="move_file">
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38 <source>bowtie2</source>
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39 <destination>$INSTALL_DIR</destination>
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40 </action>
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41 <action type="move_file">
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42 <source>bowtie2-align</source>
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43 <destination>$INSTALL_DIR</destination>
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44 </action>
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45 <action type="move_file">
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46 <source>bowtie2-build</source>
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47 <destination>$INSTALL_DIR</destination>
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48 </action>
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49 <action type="move_file">
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50 <source>bowtie2-inspect</source>
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51 <destination>$INSTALL_DIR</destination>
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52 </action>
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53 </actions>
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54 <action type="set_environment">
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55 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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56 </action>
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57 </actions_group>
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58 </install>
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59 <readme></readme>
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60 </package>
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61 </tool_dependency>