Mercurial > repos > devteam > package_bowtie_0_12_7

comparison tool_dependencies.xml @ 0:028d22e7b70f draft

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Imported from capsule None
author devteam
date Mon, 27 Jan 2014 09:24:51 -0500
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children 9f9f38617a98
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-1:000000000000 0:028d22e7b70f
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="bowtie" version="0.12.7">
4 <install version="1.0">
5 <actions_group>
6 <actions os="linux" architecture="x86_64">
7 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/bowtie/bowtie-0.12.7-linux-x86_64.tgz</action>
8 <action type="move_directory_files">
9 <source_directory>.</source_directory>
10 <destination_directory>$INSTALL_DIR</destination_directory>
11 </action>
12 </actions>
13 <actions os="darwin" architecture="x86_64">
14 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/bowtie/bowtie-0.12.7-macos-10.5-x86_64.tgz</action>
15 <action type="move_directory_files">
16 <source_directory>.</source_directory>
17 <destination_directory>$INSTALL_DIR</destination_directory>
18 </action>
19 </actions>
20 <actions os="linux" architecture="i386">
21 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/i386/bowtie/bowtie-0.12.7-linux-i386.tgz</action>
22 <action type="move_directory_files">
23 <source_directory>.</source_directory>
24 <destination_directory>$INSTALL_DIR</destination_directory>
25 </action>
26 </actions>
27 <actions os="darwin" architecture="i386">
28 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/i386/bowtie/bowtie-0.12.7-macos-10.5-i386.tgz</action>
29 <action type="move_directory_files">
30 <source_directory>.</source_directory>
31 <destination_directory>$INSTALL_DIR</destination_directory>
32 </action>
33 </actions>
34 <actions>
35 <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie/0.12.7/bowtie-0.12.7-src.zip</action>
36 <action type="shell_command">make</action>
37 <action type="move_file">
38 <source>bowtie</source>
39 <destination>$INSTALL_DIR</destination>
40 </action>
41 <action type="move_file">
42 <source>bowtie-build</source>
43 <destination>$INSTALL_DIR</destination>
44 </action>
45 <action type="move_file">
46 <source>bowtie-inspect</source>
47 <destination>$INSTALL_DIR</destination>
48 </action>
49 </actions>
50 <action type="set_environment">
51 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
52 </action>
53 </actions_group>
54 </install>
55 <readme></readme>
56 </package>
57 </tool_dependency>