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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="2.11.0">
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4 <repository changeset_revision="6e1b17857732" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="rpy" version="1.0.3">
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7 <install version="1.0">
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8 <actions>
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9 <!--
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10 Need to download from depot.galaxyproject.org, because the distributed version of rpy 1.0.3
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11 doesn't recognize R 2.11.0 as a valid version.
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12 -->
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13 <action type="download_by_url">http://depot.galaxyproject.org/package/source/rpy-1.0.3.tar.gz</action>
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14 <action type="set_environment_for_install">
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15 <repository changeset_revision="6e1b17857732" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu">
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16 <package name="R" version="2.11.0" />
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17 </repository>
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18 </action>
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19 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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20 <action type="shell_command">
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21 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &&
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22 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
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23 </action>
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24 <action type="set_environment">
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25 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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26 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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27 <environment_variable action="set_to" name="PYTHONPATH_RPY">$INSTALL_DIR/lib/python</environment_variable>
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28 <environment_variable action="set_to" name="PATH_RPY">$INSTALL_DIR/bin</environment_variable>
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29 </action>
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30 </actions>
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31 </install>
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32 <readme />
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33 </package>
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34 </tool_dependency>
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