Mercurial > repos > devteam > package_vcftools_0_1_11

changeset 0:61f9ddecde82 draft

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Uploaded
author devteam
date Sun, 24 Nov 2013 13:25:12 -0500
parents
children 7d66b50885d1
files tool_dependencies.xml
diffstat 1 files changed, 20 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sun Nov 24 13:25:12 2013 -0500
@@ -0,0 +1,20 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="vcftools" version="0.1.11">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://downloads.sourceforge.net/project/vcftools/vcftools_0.1.11.tar.gz</action>
+                <action type="shell_command">make</action>
+                <action type="shell_command">PREFIX="$INSTALL_DIR/vcftools" make install</action>
+                <!-- For some reason, the vcftools binary does not get installed using 'make install' above, so include manually. -->
+                <action type="shell_command">cp bin/vcftools $INSTALL_DIR/vcftools/bin</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/vcftools/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project
+        </readme>
+    </package>
+</tool_dependency>
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