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5
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1 ## htsjdk.samtools.metrics.StringHeader
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2 # picard.sam.markduplicates.EstimateLibraryComplexity INPUT=[/Users/anton/galaxy-central/database/files/000/dataset_951.dat] OUTPUT=/Users/anton/galaxy-central/database/files/001/dataset_1073.dat MIN_IDENTICAL_BASES=5 MAX_DIFF_RATE=0.03 MIN_MEAN_QUALITY=20 MAX_GROUP_RATIO=500 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).*. OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3472024 CREATE_INDEX=false CREATE_MD5_FILE=false
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3 ## htsjdk.samtools.metrics.StringHeader
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4 # Started on: Fri Oct 17 13:39:31 EDT 2014
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5
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6 ## METRICS CLASS picard.sam.DuplicationMetrics
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7 LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE
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8 Unknown 0 982 0 0 116 0 0.118126 3822
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9
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10 ## HISTOGRAM java.lang.Integer
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11 duplication_group_count Unknown
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12 1 781
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13 2 65
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14 3 12
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15 4 5
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16 5 3
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17 6 1
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18
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