Mercurial > repos > devteam > picard
annotate test-data/picard_MeanQualityByCycle_test1.tab @ 22:f6ced08779c4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit b6e11aa8e5fd1da27909207ec4f09cbbac467495
| author | iuc |
|---|---|
| date | Fri, 29 Mar 2019 08:34:36 -0400 |
| parents | 5053a18d9bc8 |
| children | 3f254c5ced1d |
| rev | line source |
|---|---|
| 5 | 1 ## htsjdk.samtools.metrics.StringHeader |
|
19
5053a18d9bc8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 7036343b9ac0a0ffc2ce4f6db465b9298ef05e73
iuc
parents:
5
diff
changeset
|
2 # MeanQualityByCycle CHART_OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_71.dat ALIGNED_READS_ONLY=false PF_READS_ONLY=false INPUT=picard_MeanQualityByCycle_bam OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_70.dat ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT REFERENCE_SEQUENCE=localref.fa STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json USE_JDK_DEFLATER=false USE_JDK_INFLATER=false |
| 5 | 3 ## htsjdk.samtools.metrics.StringHeader |
|
19
5053a18d9bc8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 7036343b9ac0a0ffc2ce4f6db465b9298ef05e73
iuc
parents:
5
diff
changeset
|
4 # Started on: Sat Apr 14 09:33:43 CEST 2018 |
| 5 | 5 |
| 6 | |
| 7 ## HISTOGRAM java.lang.Integer | |
| 8 CYCLE MEAN_QUALITY | |
| 9 1 30.92 | |
| 10 2 32.06 | |
| 11 3 31.93 | |
| 12 4 32.2 | |
| 13 5 32.11 | |
| 14 6 35.73 | |
| 15 7 35.77 | |
| 16 8 35.93 | |
| 17 9 34.98 | |
| 18 10 35.63 | |
| 19 11 35.38 | |
| 20 12 36.14 | |
| 21 13 37.72 | |
| 22 14 37.39 | |
| 23 15 37.27 | |
| 24 16 37.29 | |
| 25 17 37.21 | |
| 26 18 37.13 | |
| 27 19 37.28 | |
| 28 20 36.9 | |
| 29 21 37.12 | |
| 30 22 36.77 | |
| 31 23 37.81 | |
| 32 24 37.64 | |
| 33 25 38.32 | |
| 34 26 38.15 | |
| 35 27 37.97 | |
| 36 28 37.8 | |
| 37 29 37.86 | |
| 38 30 37.85 | |
| 39 31 38.21 | |
| 40 32 38.36 | |
| 41 33 38.24 | |
| 42 34 38.2 | |
| 43 35 38.04 | |
| 44 36 37.52 | |
| 45 37 37.68 | |
| 46 38 38.12 | |
| 47 39 37.46 | |
| 48 40 37.66 | |
| 49 41 37.23 | |
| 50 42 37.25 | |
| 51 43 37.28 | |
| 52 44 37.61 | |
| 53 45 37.49 | |
| 54 46 37.67 | |
| 55 47 38.02 | |
| 56 48 37.43 | |
| 57 49 37.91 | |
| 58 50 38.02 | |
| 59 51 38.01 | |
| 60 52 37.97 | |
| 61 53 37.53 | |
| 62 54 37.46 | |
| 63 55 37.83 | |
| 64 56 37.38 | |
| 65 57 37.54 | |
| 66 58 37.39 | |
| 67 59 37.69 | |
| 68 60 37.99 | |
| 69 61 37.65 | |
| 70 62 37.19 | |
| 71 63 38.03 | |
| 72 64 37.54 | |
| 73 65 38.06 | |
| 74 66 37.6 | |
| 75 67 37.17 | |
| 76 68 37.91 | |
| 77 69 37.51 | |
| 78 70 37.97 | |
| 79 71 37.78 | |
| 80 72 37.88 | |
| 81 73 37.54 | |
| 82 74 36.84 | |
| 83 75 37.3 | |
| 84 76 37.89 | |
| 85 77 37.64 | |
| 86 78 37.54 | |
| 87 79 37.73 | |
| 88 80 37.23 | |
| 89 81 36.97 | |
| 90 82 37.45 | |
| 91 83 36.68 | |
| 92 84 36.87 | |
| 93 85 36.82 | |
| 94 86 37.47 | |
| 95 87 37.18 | |
| 96 88 37.42 | |
| 97 89 37.4 | |
| 98 90 36.42 | |
| 99 91 37.12 | |
| 100 92 37.63 | |
| 101 93 37.37 | |
| 102 94 37.38 | |
| 103 95 37.55 | |
| 104 96 37.84 | |
| 105 97 38.14 | |
| 106 98 37.42 | |
| 107 99 38.12 | |
| 108 100 36.51 | |
| 109 101 36.54 | |
| 110 102 37.02 | |
| 111 103 36.53 | |
| 112 104 37.57 | |
| 113 105 37.4 | |
| 114 106 37.28 | |
| 115 107 37.32 | |
| 116 108 37.44 | |
| 117 109 37.4 | |
| 118 110 36.82 | |
| 119 111 37.73 | |
| 120 112 37.42 | |
| 121 113 37.53 | |
| 122 114 36.52 | |
| 123 115 36.44 | |
| 124 116 36.06 | |
| 125 117 37.45 | |
| 126 118 36.9 | |
| 127 119 36.53 | |
| 128 120 37.15 | |
| 129 121 36.28 | |
| 130 122 37.27 | |
| 131 123 37.05 | |
| 132 124 37.34 | |
| 133 125 35.58 | |
| 134 126 36.2 | |
| 135 127 36.72 | |
| 136 128 36.17 | |
| 137 129 36.99 | |
| 138 130 36.39 | |
| 139 131 37.17 | |
| 140 132 36.61 | |
| 141 133 36.34 | |
| 142 134 36.7 | |
| 143 135 36.18 | |
| 144 136 36.07 | |
| 145 137 37.15 | |
| 146 138 36.16 | |
| 147 139 35.52 | |
| 148 140 36.35 | |
| 149 141 36.77 | |
| 150 142 35.8 | |
| 151 143 36.47 | |
| 152 144 36.07 | |
| 153 145 36.32 | |
| 154 146 36.53 | |
| 155 147 36.16 | |
| 156 148 35.99 | |
| 157 149 35.58 | |
| 158 150 35.99 | |
| 159 151 35.37 | |
| 160 152 34.34 | |
| 161 153 34.51 | |
| 162 154 35.34 | |
| 163 155 35.83 | |
| 164 156 36.26 | |
| 165 157 36.28 | |
| 166 158 36.68 | |
| 167 159 36.18 | |
| 168 160 36.44 | |
| 169 161 35.34 | |
| 170 162 34.81 | |
| 171 163 35.58 | |
| 172 164 35.72 | |
| 173 165 35.63 | |
| 174 166 36.01 | |
| 175 167 35.22 | |
| 176 168 35.82 | |
| 177 169 35.29 | |
| 178 170 35 | |
| 179 171 35.46 | |
| 180 172 34.78 | |
| 181 173 34.54 | |
| 182 174 33.67 | |
| 183 175 34.51 | |
| 184 176 34.47 | |
| 185 177 35.38 | |
| 186 178 34.74 | |
| 187 179 35.6 | |
| 188 180 34.5 | |
| 189 181 34.27 | |
| 190 182 34.26 | |
| 191 183 35.11 | |
| 192 184 34.54 | |
| 193 185 33.99 | |
| 194 186 33.22 | |
| 195 187 33.8 | |
| 196 188 33.43 | |
| 197 189 34.4 | |
| 198 190 32.97 | |
| 199 191 33.59 | |
| 200 192 33.29 | |
| 201 193 32.52 | |
| 202 194 34.05 | |
| 203 195 33.54 | |
| 204 196 32.56 | |
| 205 197 33.88 | |
| 206 198 33.03 | |
| 207 199 32.74 | |
| 208 200 31.84 | |
| 209 201 33.09 | |
| 210 202 32.95 | |
| 211 203 32.85 | |
| 212 204 33.79 | |
| 213 205 33.35 | |
| 214 206 33.05 | |
| 215 207 32.71 | |
| 216 208 32.83 | |
| 217 209 32.76 | |
| 218 210 31.26 | |
| 219 211 31.29 | |
| 220 212 32.19 | |
| 221 213 33.79 | |
| 222 214 33.22 | |
| 223 215 32.27 | |
| 224 216 32.03 | |
| 225 217 31.8 | |
| 226 218 32.67 | |
| 227 219 32.57 | |
| 228 220 32.32 | |
| 229 221 31.24 | |
| 230 222 31.27 | |
| 231 223 31.22 | |
| 232 224 31.59 | |
| 233 225 30.77 | |
| 234 226 30.36 | |
| 235 227 30.66 | |
| 236 228 30.16 | |
| 237 229 30.91 | |
| 238 230 32.04 | |
| 239 231 32.24 | |
| 240 232 32.04 | |
| 241 233 30.92 | |
| 242 234 30.78 | |
| 243 235 31.59 | |
| 244 236 31.73 | |
| 245 237 32.32 | |
| 246 238 30.25 | |
| 247 239 29.03 | |
| 248 240 29.61 | |
| 249 241 30.03 | |
| 250 242 29.38 | |
| 251 243 28.82 | |
| 252 244 29.32 | |
| 253 245 28.41 | |
| 254 246 28.49 | |
| 255 247 29.24 | |
| 256 248 29.71 | |
| 257 249 29.51 | |
| 258 250 28.9 | |
| 259 251 20.13 | |
| 260 252 32.02 | |
| 261 253 33.03 | |
| 262 254 33.14 | |
| 263 255 33.32 | |
| 264 256 32.92 | |
| 265 257 35.86 | |
| 266 258 36.02 | |
| 267 259 35.97 | |
| 268 260 35.76 | |
| 269 261 36.03 | |
| 270 262 35.9 | |
| 271 263 36.35 | |
| 272 264 37.5 | |
| 273 265 37.28 | |
| 274 266 37.61 | |
| 275 267 37.7 | |
| 276 268 37.66 | |
| 277 269 37.48 | |
| 278 270 37.68 | |
| 279 271 37.59 | |
| 280 272 37.66 | |
| 281 273 37.73 | |
| 282 274 38.05 | |
| 283 275 38.42 | |
| 284 276 38.12 | |
| 285 277 38.37 | |
| 286 278 38.41 | |
| 287 279 38.32 | |
| 288 280 38.39 | |
| 289 281 38.2 | |
| 290 282 38.26 | |
| 291 283 38.34 | |
| 292 284 38.22 | |
| 293 285 38.37 | |
| 294 286 38.33 | |
| 295 287 38.39 | |
| 296 288 38.17 | |
| 297 289 38.1 | |
| 298 290 38.16 | |
| 299 291 37.86 | |
| 300 292 37.77 | |
| 301 293 38.23 | |
| 302 294 37.79 | |
| 303 295 37.64 | |
| 304 296 38.02 | |
| 305 297 37.77 | |
| 306 298 38.2 | |
| 307 299 38.02 | |
| 308 300 37.83 | |
| 309 301 38.26 | |
| 310 302 38.2 | |
| 311 303 38.04 | |
| 312 304 37.86 | |
| 313 305 38.14 | |
| 314 306 38.25 | |
| 315 307 37.88 | |
| 316 308 38.39 | |
| 317 309 38.3 | |
| 318 310 37.82 | |
| 319 311 37.71 | |
| 320 312 38.23 | |
| 321 313 38.07 | |
| 322 314 38.06 | |
| 323 315 37.71 | |
| 324 316 37.92 | |
| 325 317 37.78 | |
| 326 318 37.89 | |
| 327 319 37.37 | |
| 328 320 37.2 | |
| 329 321 37.59 | |
| 330 322 37.88 | |
| 331 323 37.35 | |
| 332 324 37.8 | |
| 333 325 37.11 | |
| 334 326 37.34 | |
| 335 327 36.97 | |
| 336 328 37.34 | |
| 337 329 37.27 | |
| 338 330 37.6 | |
| 339 331 37.4 | |
| 340 332 37.31 | |
| 341 333 37.57 | |
| 342 334 37.12 | |
| 343 335 37.46 | |
| 344 336 37.45 | |
| 345 337 37.47 | |
| 346 338 37.27 | |
| 347 339 37.62 | |
| 348 340 37.6 | |
| 349 341 37.78 | |
| 350 342 37.51 | |
| 351 343 37.81 | |
| 352 344 37.92 | |
| 353 345 37.86 | |
| 354 346 37.22 | |
| 355 347 37.75 | |
| 356 348 37.5 | |
| 357 349 37.12 | |
| 358 350 37.2 | |
| 359 351 36.71 | |
| 360 352 37.26 | |
| 361 353 37.27 | |
| 362 354 37.96 | |
| 363 355 38 | |
| 364 356 37.49 | |
| 365 357 37.61 | |
| 366 358 36.68 | |
| 367 359 37.02 | |
| 368 360 37.23 | |
| 369 361 36.35 | |
| 370 362 36.78 | |
| 371 363 36.51 | |
| 372 364 36.98 | |
| 373 365 36.74 | |
| 374 366 36.98 | |
| 375 367 36.4 | |
| 376 368 36.89 | |
| 377 369 37.09 | |
| 378 370 36.85 | |
| 379 371 36.94 | |
| 380 372 37.03 | |
| 381 373 37.27 | |
| 382 374 36.99 | |
| 383 375 37.22 | |
| 384 376 36.68 | |
| 385 377 37.01 | |
| 386 378 37.16 | |
| 387 379 36.63 | |
| 388 380 37.02 | |
| 389 381 36.7 | |
| 390 382 37.36 | |
| 391 383 36.97 | |
| 392 384 36.61 | |
| 393 385 36.4 | |
| 394 386 36.31 | |
| 395 387 36.38 | |
| 396 388 36.57 | |
| 397 389 36.17 | |
| 398 390 35.9 | |
| 399 391 36.52 | |
| 400 392 36.31 | |
| 401 393 35.73 | |
| 402 394 35.6 | |
| 403 395 35.14 | |
| 404 396 35.58 | |
| 405 397 34.47 | |
| 406 398 36.4 | |
| 407 399 36.35 | |
| 408 400 35.78 | |
| 409 401 35.94 | |
| 410 402 36.15 | |
| 411 403 35.06 | |
| 412 404 34.94 | |
| 413 405 35.2 | |
| 414 406 35.3 | |
| 415 407 35.66 | |
| 416 408 36.08 | |
| 417 409 35.26 | |
| 418 410 35.19 | |
| 419 411 35.12 | |
| 420 412 34.92 | |
| 421 413 35.04 | |
| 422 414 34.72 | |
| 423 415 35.31 | |
| 424 416 35.41 | |
| 425 417 35.76 | |
| 426 418 34.93 | |
| 427 419 34.61 | |
| 428 420 31.67 | |
| 429 421 33.03 | |
| 430 422 34.43 | |
| 431 423 33.21 | |
| 432 424 34.64 | |
| 433 425 34.09 | |
| 434 426 33.68 | |
| 435 427 33.42 | |
| 436 428 33.14 | |
| 437 429 34.06 | |
| 438 430 33.51 | |
| 439 431 33.3 | |
| 440 432 34.18 | |
| 441 433 34.35 | |
| 442 434 34.16 | |
| 443 435 34.4 | |
| 444 436 33.83 | |
| 445 437 32.62 | |
| 446 438 32.52 | |
| 447 439 32.2 | |
| 448 440 31.23 | |
| 449 441 30.53 | |
| 450 442 31.09 | |
| 451 443 31.4 | |
| 452 444 32.42 | |
| 453 445 32.48 | |
| 454 446 32.09 | |
| 455 447 32.82 | |
| 456 448 32.44 | |
| 457 449 31.59 | |
| 458 450 31.29 | |
| 459 451 31.51 | |
| 460 452 31.44 | |
| 461 453 29.73 | |
| 462 454 30.59 | |
| 463 455 31.49 | |
| 464 456 29.87 | |
| 465 457 30.48 | |
| 466 458 30.45 | |
| 467 459 31.44 | |
| 468 460 29.87 | |
| 469 461 30.61 | |
| 470 462 30.39 | |
| 471 463 30.65 | |
| 472 464 28.86 | |
| 473 465 28.55 | |
| 474 466 28.77 | |
| 475 467 30 | |
| 476 468 30.1 | |
| 477 469 30.27 | |
| 478 470 31.21 | |
| 479 471 30.62 | |
| 480 472 31.14 | |
| 481 473 29.87 | |
| 482 474 28.56 | |
| 483 475 28.48 | |
| 484 476 29.52 | |
| 485 477 28.14 | |
| 486 478 28.27 | |
| 487 479 28.02 | |
| 488 480 28.57 | |
| 489 481 27.39 | |
| 490 482 28.5 | |
| 491 483 28.68 | |
| 492 484 27.18 | |
| 493 485 27.42 | |
| 494 486 27.09 | |
| 495 487 25.93 | |
| 496 488 27.18 | |
| 497 489 26.68 | |
| 498 490 26.65 | |
| 499 491 26.27 | |
| 500 492 25.41 | |
| 501 493 25.3 | |
| 502 494 26.21 | |
| 503 495 26.68 | |
| 504 496 26.32 | |
| 505 497 25.83 | |
| 506 498 24.29 | |
| 507 499 24.26 | |
| 508 500 24.58 | |
| 509 501 24.86 | |
| 510 502 19.15 | |
| 511 |