Mercurial > repos > devteam > sam_to_bam

comparison sam_to_bam.xml @ 5:c73bf16b45df draft

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author devteam
date Thu, 05 Mar 2015 21:28:25 -0500
parents 8176b2575aa1
children d04d9f1c6791
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4:8176b2575aa1 5:c73bf16b45df
90 90
91 This tool uses the SAMTools_ toolkit to produce an indexed BAM file based on a sorted input SAM file. 91 This tool uses the SAMTools_ toolkit to produce an indexed BAM file based on a sorted input SAM file.
92 92
93 .. _SAMTools: http://samtools.sourceforge.net/samtools.shtml 93 .. _SAMTools: http://samtools.sourceforge.net/samtools.shtml
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95 ------
96
97 **Citation**
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99 For the underlying tool, please cite `Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009 Aug 15;25(16):2078-9. <http://www.ncbi.nlm.nih.gov/pubmed/19505943>`_
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101 </help> 95 </help>
96 <citations>
97 <citation type="doi">10.1093/bioinformatics/btp352</citation>
98 </citations>
102 </tool> 99 </tool>