Mercurial > repos > devteam > sam_to_bam

changeset 10:cf1ffd88f895 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 851f81495c875ac09d936537ffd2b32e6af2c8c5"
author iuc
date Thu, 17 Oct 2019 02:17:48 -0400
parents b77f7b516b17
children 1e69848b596f
files sam_to_bam.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/sam_to_bam.xml	Mon Jul 29 08:47:05 2019 -0400
+++ b/sam_to_bam.xml	Thu Oct 17 02:17:48 2019 -0400
@@ -26,7 +26,7 @@
             -O bam
             -@ \${GALAXY_SLOTS:-1}
             -o '$output1'
-            -T temp
+            -T "\${TMPDIR:-.}"
     ]]></command>
 
     <inputs>
@@ -42,7 +42,7 @@
                 </param>
                 <param name="index" type="select" label="Using reference genome">
                     <options from_data_table="fasta_indexes">
-                        <filter column="1" key="dbkey" ref="input1" type="data_meta" />
+                        <filter column="dbkey" key="dbkey" ref="input1" type="data_meta" />
                         <validator message="No reference genome is available for the build associated with the selected input dataset" type="no_options" />
                     </options>
                 </param>