Mercurial > repos > devteam > samtools_flagstat

comparison test-data/samtools_flagstat_out1.json @ 7:fe34990e5ce7 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
author iuc
date Tue, 28 Sep 2021 16:13:41 +0000
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6:22970df7a40e 7:fe34990e5ce7
1 {
2 "QC-passed reads": {
3 "total": 200,
4 "primary": 200,
5 "secondary": 0,
6 "supplementary": 0,
7 "duplicates": 0,
8 "primary duplicates": 0,
9 "mapped": 25,
10 "mapped %": 12.50,
11 "primary mapped": 25,
12 "primary mapped %": 12.50,
13 "paired in sequencing": 200,
14 "read1": 100,
15 "read2": 100,
16 "properly paired": 0,
17 "properly paired %": 0.00,
18 "with itself and mate mapped": 0,
19 "singletons": 25,
20 "singletons %": 12.50,
21 "with mate mapped to a different chr": 0,
22 "with mate mapped to a different chr (mapQ >= 5)": 0
23 },
24 "QC-failed reads": {
25 "total": 0,
26 "primary": 0,
27 "secondary": 0,
28 "supplementary": 0,
29 "duplicates": 0,
30 "primary duplicates": 0,
31 "mapped": 0,
32 "mapped %": null,
33 "primary mapped": 0,
34 "primary mapped %": null,
35 "paired in sequencing": 0,
36 "read1": 0,
37 "read2": 0,
38 "properly paired": 0,
39 "properly paired %": null,
40 "with itself and mate mapped": 0,
41 "singletons": 0,
42 "singletons %": null,
43 "with mate mapped to a different chr": 0,
44 "with mate mapped to a different chr (mapQ >= 5)": 0
45 }
46 }