Mercurial > repos > devteam > samtools_flagstat
view test-data/samtools_flagstat_out1.json @ 8:fefd89ab563c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit cd62639660bef041ba14ecff337fb98e84e75d8a
| author | iuc |
|---|---|
| date | Mon, 20 Nov 2023 22:15:35 +0000 |
| parents | fe34990e5ce7 |
| children |
line wrap: on
line source
{ "QC-passed reads": { "total": 200, "primary": 200, "secondary": 0, "supplementary": 0, "duplicates": 0, "primary duplicates": 0, "mapped": 25, "mapped %": 12.50, "primary mapped": 25, "primary mapped %": 12.50, "paired in sequencing": 200, "read1": 100, "read2": 100, "properly paired": 0, "properly paired %": 0.00, "with itself and mate mapped": 0, "singletons": 25, "singletons %": 12.50, "with mate mapped to a different chr": 0, "with mate mapped to a different chr (mapQ >= 5)": 0 }, "QC-failed reads": { "total": 0, "primary": 0, "secondary": 0, "supplementary": 0, "duplicates": 0, "primary duplicates": 0, "mapped": 0, "mapped %": null, "primary mapped": 0, "primary mapped %": null, "paired in sequencing": 0, "read1": 0, "read2": 0, "properly paired": 0, "properly paired %": null, "with itself and mate mapped": 0, "singletons": 0, "singletons %": null, "with mate mapped to a different chr": 0, "with mate mapped to a different chr (mapQ >= 5)": 0 } }