Mercurial > repos > devteam > samtools_phase
annotate test-data/samtools_phase_out_1_log.txt @ 3:b5c3b1856370 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_phase commit ca0d1d44099fd21e0f8214102f4d8a2fd2d054d6
author | iuc |
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date | Mon, 29 Jul 2019 08:49:17 -0400 |
parents | 8bfe0d1616d2 |
children |
rev | line source |
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0 | 1 CC |
2 CC Descriptions: | |
3 CC | |
4 CC CC comments | |
5 CC PS start of a phase set | |
6 CC FL filtered region | |
7 CC M[012] markers; 0 for singletons, 1 for phased and 2 for filtered | |
8 CC EV supporting reads; SAM format | |
9 CC // end of a phase set | |
10 CC | |
11 CC Formats of PS, FL and M[012] lines (1-based coordinates): | |
12 CC | |
13 CC PS chr phaseSetStart phaseSetEnd | |
14 CC FL chr filterStart filterEnd | |
15 CC M? chr PS pos allele0 allele1 hetIndex #supports0 #errors0 #supp1 #err1 | |
16 CC | |
17 CC | |
18 PS chrI 1187 1290 | |
19 M1 chrI 1187 1187 T A 1 2 0 4 0 | |
20 M1 chrI 1187 1216 T A 2 3 0 4 0 | |
21 M1 chrI 1187 1222 C A 3 3 0 3 1 | |
22 M1 chrI 1187 1290 A T 4 1 0 0 0 | |
1
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
23 EV 0 chrI 1 40 3M * 0 0 AAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1145 |
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
24 EV 0 chrI 1 40 3M * 0 0 TTC * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1157 |
0 | 25 EV 0 chrI 1 40 3M * 0 0 TTC * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1141 |
26 EV 0 chrI 1 40 3M * 0 0 AAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1147 | |
27 EV 0 chrI 1 40 3M * 0 0 AAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1176 | |
1
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
28 EV 0 chrI 1 40 3M * 0 0 AAC * YP:i:1 YF:i:0 YI:i:2 YO:i:1 YS:i:1164 |
0 | 29 EV 0 chrI 2 40 3M * 0 0 TCA * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1215 |
30 // |