Mercurial > repos > devteam > samtools_phase
view test-data/samtools_phase_out_1_log.txt @ 3:b5c3b1856370 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_phase commit ca0d1d44099fd21e0f8214102f4d8a2fd2d054d6
author | iuc |
---|---|
date | Mon, 29 Jul 2019 08:49:17 -0400 |
parents | 8bfe0d1616d2 |
children |
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CC CC Descriptions: CC CC CC comments CC PS start of a phase set CC FL filtered region CC M[012] markers; 0 for singletons, 1 for phased and 2 for filtered CC EV supporting reads; SAM format CC // end of a phase set CC CC Formats of PS, FL and M[012] lines (1-based coordinates): CC CC PS chr phaseSetStart phaseSetEnd CC FL chr filterStart filterEnd CC M? chr PS pos allele0 allele1 hetIndex #supports0 #errors0 #supp1 #err1 CC CC PS chrI 1187 1290 M1 chrI 1187 1187 T A 1 2 0 4 0 M1 chrI 1187 1216 T A 2 3 0 4 0 M1 chrI 1187 1222 C A 3 3 0 3 1 M1 chrI 1187 1290 A T 4 1 0 0 0 EV 0 chrI 1 40 3M * 0 0 AAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1145 EV 0 chrI 1 40 3M * 0 0 TTC * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1157 EV 0 chrI 1 40 3M * 0 0 TTC * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1141 EV 0 chrI 1 40 3M * 0 0 AAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1147 EV 0 chrI 1 40 3M * 0 0 AAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1176 EV 0 chrI 1 40 3M * 0 0 AAC * YP:i:1 YF:i:0 YI:i:2 YO:i:1 YS:i:1164 EV 0 chrI 2 40 3M * 0 0 TCA * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1215 //