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comparison test-data/12.3reads.nooverlap.expected @ 12:541082d03bef draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c
author iuc
date Sun, 08 Sep 2024 03:27:04 +0000
parents e28839a4b932
children
comparison
equal deleted inserted replaced
11:fed4aa48ba09 12:541082d03bef
1 # This file was produced by samtools stats (1.12+htslib-1.12) and can be plotted using plot-bamstats 1 # This file was produced by samtools stats (1.20+htslib-1.20) and can be plotted using plot-bamstats
2 # This file contains statistics for all reads. 2 # This file contains statistics for all reads.
3 # The command line was: stats -t /tmp/tmp0r5zs075/files/1/3/0/dataset_13082855-efe1-437e-8a91-ff7d013770db.dat -p -@ 0 infile 3 # The command line was: stats -t /tmp/tmp5q_kwqc0/files/b/2/6/dataset_b262e070-b3ea-4ab2-970d-29726b177ea2.dat -p -@ 0 infile
4 # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities 4 # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities
5 # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) 5 # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
6 CHK 09f8b87f 140798ec 2b989f07 6 CHK 09f8b87f 140798ec 2b989f07
7 # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. 7 # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
8 SN raw total sequences: 3 # excluding supplementary and secondary reads 8 SN raw total sequences: 3 # excluding supplementary and secondary reads
870 RL 100 3 870 RL 100 3
871 # Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count 871 # Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
872 FRL 100 1 872 FRL 100 1
873 # Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count 873 # Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
874 LRL 100 2 874 LRL 100 2
875 # Mapping qualities for reads !(UNMAP|SECOND|SUPPL|QCFAIL|DUP). Use `grep ^MAPQ | cut -f 2-` to extract this part. The columns are: mapq, count
876 MAPQ 37 1
877 MAPQ 60 2
875 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions 878 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
876 ID 1 1 2 879 ID 1 1 2
877 # Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev) 880 # Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
878 IC 19 0 0 1 0 881 IC 19 0 0 1 0
879 IC 92 0 0 1 0 882 IC 92 0 0 1 0