Mercurial > repos > devteam > samtools_stats
view test-data/12.3reads.nooverlap.expected @ 12:541082d03bef draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c
| author | iuc |
|---|---|
| date | Sun, 08 Sep 2024 03:27:04 +0000 |
| parents | e28839a4b932 |
| children |
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# This file was produced by samtools stats (1.20+htslib-1.20) and can be plotted using plot-bamstats # This file contains statistics for all reads. # The command line was: stats -t /tmp/tmp5q_kwqc0/files/b/2/6/dataset_b262e070-b3ea-4ab2-970d-29726b177ea2.dat -p -@ 0 infile # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) CHK 09f8b87f 140798ec 2b989f07 # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. SN raw total sequences: 3 # excluding supplementary and secondary reads SN filtered sequences: 0 SN sequences: 3 SN is sorted: 1 SN 1st fragments: 1 SN last fragments: 2 SN reads mapped: 3 SN reads mapped and paired: 3 # paired-end technology bit set + both mates mapped SN reads unmapped: 0 SN reads properly paired: 3 # proper-pair bit set SN reads paired: 3 # paired-end technology bit set SN reads duplicated: 0 # PCR or optical duplicate bit set SN reads MQ0: 0 # mapped and MQ=0 SN reads QC failed: 0 SN non-primary alignments: 0 SN supplementary alignments: 0 SN total length: 300 # ignores clipping SN total first fragment length: 100 # ignores clipping SN total last fragment length: 200 # ignores clipping SN bases mapped: 300 # ignores clipping SN bases mapped (cigar): 280 # more accurate SN bases trimmed: 0 SN bases duplicated: 0 SN mismatches: 11 # from NM fields SN error rate: 3.928572e-02 # mismatches / bases mapped (cigar) SN average length: 100 SN average first fragment length: 100 SN average last fragment length: 100 SN maximum length: 100 SN maximum first fragment length: 100 SN maximum last fragment length: 100 SN average quality: 33.3 SN insert size average: 180.0 SN insert size standard deviation: 0.0 SN inward oriented pairs: 1 SN outward oriented pairs: 0 SN pairs with other orientation: 0 SN pairs on different chromosomes: 0 SN percentage of properly paired reads (%): 100.0 SN bases inside the target: 180 SN percentage of target genome with coverage > 0 (%): 99.44 # First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. FFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 FFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 FFQ 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 FFQ 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 FFQ 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 FFQ 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 FFQ 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 FFQ 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 FFQ 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 FFQ 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 FFQ 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 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Use `grep ^LFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. LFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 LFQ 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 LFQ 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 LFQ 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 LFQ 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 LFQ 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 LFQ 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 LFQ 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 LFQ 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 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0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 LFQ 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 LFQ 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 LFQ 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 LFQ 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 LFQ 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 LFQ 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 LFQ 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 LFQ 42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 LFQ 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 LFQ 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 LFQ 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 LFQ 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 LFQ 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 LFQ 49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 LFQ 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 LFQ 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 LFQ 52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 LFQ 53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 LFQ 54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 LFQ 55 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 LFQ 56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 LFQ 57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 LFQ 58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 59 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 60 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 LFQ 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 LFQ 62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 LFQ 63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 LFQ 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 LFQ 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 LFQ 69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 LFQ 71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 LFQ 72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 LFQ 73 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 LFQ 74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 LFQ 75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 LFQ 77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 LFQ 78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 79 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 LFQ 81 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 LFQ 83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 85 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 86 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 87 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 LFQ 88 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 LFQ 89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 LFQ 90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 91 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 94 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 LFQ 96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 97 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 LFQ 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 # GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part. GCF 25.38 0 GCF 51.26 1 # GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part. GCL 24.87 0 GCL 50.25 1 GCL 51.26 0 GCL 52.26 1 # ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] GCC 1 0.00 0.00 0.00 100.00 0.00 0.00 GCC 2 0.00 66.67 0.00 33.33 0.00 0.00 GCC 3 0.00 66.67 0.00 33.33 0.00 0.00 GCC 4 0.00 66.67 0.00 33.33 0.00 0.00 GCC 5 0.00 100.00 0.00 0.00 0.00 0.00 GCC 6 0.00 0.00 0.00 100.00 0.00 0.00 GCC 7 0.00 0.00 0.00 100.00 0.00 0.00 GCC 8 0.00 66.67 0.00 33.33 0.00 0.00 GCC 9 0.00 100.00 0.00 0.00 0.00 0.00 GCC 10 0.00 33.33 0.00 66.67 0.00 0.00 GCC 11 0.00 33.33 0.00 66.67 0.00 0.00 GCC 12 0.00 66.67 0.00 33.33 0.00 0.00 GCC 13 0.00 33.33 0.00 66.67 0.00 0.00 GCC 14 0.00 100.00 0.00 0.00 0.00 0.00 GCC 15 0.00 66.67 0.00 33.33 0.00 0.00 GCC 16 0.00 0.00 0.00 100.00 0.00 0.00 GCC 17 0.00 0.00 0.00 100.00 0.00 0.00 GCC 18 0.00 66.67 0.00 33.33 0.00 0.00 GCC 19 0.00 66.67 0.00 33.33 0.00 0.00 GCC 20 0.00 100.00 0.00 0.00 0.00 0.00 GCC 21 0.00 66.67 0.00 33.33 0.00 0.00 GCC 22 0.00 0.00 0.00 100.00 0.00 0.00 GCC 23 0.00 33.33 0.00 66.67 0.00 0.00 GCC 24 0.00 66.67 0.00 33.33 0.00 0.00 GCC 25 0.00 66.67 0.00 33.33 0.00 0.00 GCC 26 0.00 33.33 0.00 66.67 0.00 0.00 GCC 27 0.00 66.67 0.00 33.33 0.00 0.00 GCC 28 0.00 66.67 0.00 33.33 0.00 0.00 GCC 29 0.00 33.33 0.00 66.67 0.00 0.00 GCC 30 0.00 66.67 0.00 33.33 0.00 0.00 GCC 31 0.00 66.67 0.00 33.33 0.00 0.00 GCC 32 0.00 0.00 0.00 100.00 0.00 0.00 GCC 33 0.00 33.33 0.00 66.67 0.00 0.00 GCC 34 0.00 66.67 0.00 33.33 0.00 0.00 GCC 35 0.00 33.33 0.00 66.67 0.00 0.00 GCC 36 0.00 100.00 0.00 0.00 0.00 0.00 GCC 37 0.00 66.67 0.00 33.33 0.00 0.00 GCC 38 0.00 0.00 0.00 100.00 0.00 0.00 GCC 39 0.00 33.33 0.00 66.67 0.00 0.00 GCC 40 0.00 66.67 0.00 33.33 0.00 0.00 GCC 41 0.00 66.67 0.00 33.33 0.00 0.00 GCC 42 0.00 33.33 0.00 66.67 0.00 0.00 GCC 43 0.00 66.67 0.00 33.33 0.00 0.00 GCC 44 0.00 66.67 0.00 33.33 0.00 0.00 GCC 45 0.00 66.67 0.00 33.33 0.00 0.00 GCC 46 0.00 66.67 0.00 33.33 0.00 0.00 GCC 47 0.00 33.33 0.00 66.67 0.00 0.00 GCC 48 0.00 0.00 0.00 100.00 0.00 0.00 GCC 49 0.00 33.33 0.00 66.67 0.00 0.00 GCC 50 0.00 100.00 0.00 0.00 0.00 0.00 GCC 51 0.00 66.67 0.00 33.33 0.00 0.00 GCC 52 0.00 100.00 0.00 0.00 0.00 0.00 GCC 53 0.00 0.00 0.00 100.00 0.00 0.00 GCC 54 0.00 0.00 0.00 100.00 0.00 0.00 GCC 55 0.00 66.67 0.00 33.33 0.00 0.00 GCC 56 0.00 100.00 0.00 0.00 0.00 0.00 GCC 57 0.00 33.33 0.00 66.67 0.00 0.00 GCC 58 0.00 33.33 0.00 66.67 0.00 0.00 GCC 59 0.00 66.67 0.00 33.33 0.00 0.00 GCC 60 0.00 33.33 0.00 66.67 0.00 0.00 GCC 61 0.00 100.00 0.00 0.00 0.00 0.00 GCC 62 0.00 66.67 0.00 33.33 0.00 0.00 GCC 63 0.00 0.00 0.00 100.00 0.00 0.00 GCC 64 0.00 0.00 0.00 100.00 0.00 0.00 GCC 65 0.00 66.67 0.00 33.33 0.00 0.00 GCC 66 0.00 66.67 0.00 33.33 0.00 0.00 GCC 67 0.00 66.67 0.00 33.33 0.00 0.00 GCC 68 0.00 100.00 0.00 0.00 0.00 0.00 GCC 69 0.00 0.00 0.00 100.00 0.00 0.00 GCC 70 0.00 0.00 0.00 100.00 0.00 0.00 GCC 71 0.00 66.67 0.00 33.33 0.00 0.00 GCC 72 0.00 100.00 0.00 0.00 0.00 0.00 GCC 73 0.00 33.33 0.00 66.67 0.00 0.00 GCC 74 0.00 33.33 0.00 66.67 0.00 0.00 GCC 75 0.00 66.67 0.00 33.33 0.00 0.00 GCC 76 0.00 33.33 0.00 66.67 0.00 0.00 GCC 77 0.00 100.00 0.00 0.00 0.00 0.00 GCC 78 0.00 66.67 0.00 33.33 0.00 0.00 GCC 79 0.00 0.00 0.00 100.00 0.00 0.00 GCC 80 0.00 0.00 0.00 100.00 0.00 0.00 GCC 81 0.00 66.67 0.00 33.33 0.00 0.00 GCC 82 0.00 100.00 0.00 0.00 0.00 0.00 GCC 83 0.00 100.00 0.00 0.00 0.00 0.00 GCC 84 0.00 33.33 0.00 66.67 0.00 0.00 GCC 85 0.00 0.00 0.00 100.00 0.00 0.00 GCC 86 0.00 33.33 0.00 66.67 0.00 0.00 GCC 87 0.00 100.00 0.00 0.00 0.00 0.00 GCC 88 0.00 66.67 0.00 33.33 0.00 0.00 GCC 89 0.00 33.33 0.00 66.67 0.00 0.00 GCC 90 0.00 33.33 0.00 66.67 0.00 0.00 GCC 91 0.00 66.67 0.00 33.33 0.00 0.00 GCC 92 0.00 100.00 0.00 0.00 0.00 0.00 GCC 93 0.00 66.67 0.00 33.33 0.00 0.00 GCC 94 0.00 33.33 0.00 66.67 0.00 0.00 GCC 95 0.00 0.00 0.00 100.00 0.00 0.00 GCC 96 0.00 66.67 0.00 33.33 0.00 0.00 GCC 97 33.33 33.33 0.00 33.33 0.00 0.00 GCC 98 0.00 66.67 0.00 33.33 0.00 0.00 GCC 99 0.00 100.00 0.00 0.00 0.00 0.00 GCC 100 0.00 0.00 0.00 100.00 0.00 0.00 # ACGT content per cycle, read oriented. Use `grep ^GCT | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%] GCT 1 33.33 0.00 0.00 66.67 GCT 2 0.00 33.33 33.33 33.33 GCT 3 0.00 33.33 33.33 33.33 GCT 4 33.33 66.67 0.00 0.00 GCT 5 0.00 66.67 33.33 0.00 GCT 6 33.33 0.00 0.00 66.67 GCT 7 33.33 0.00 0.00 66.67 GCT 8 0.00 33.33 33.33 33.33 GCT 9 0.00 66.67 33.33 0.00 GCT 10 33.33 33.33 0.00 33.33 GCT 11 33.33 33.33 0.00 33.33 GCT 12 0.00 33.33 33.33 33.33 GCT 13 0.00 0.00 33.33 66.67 GCT 14 0.00 66.67 33.33 0.00 GCT 15 33.33 66.67 0.00 0.00 GCT 16 33.33 0.00 0.00 66.67 GCT 17 33.33 0.00 0.00 66.67 GCT 18 0.00 33.33 33.33 33.33 GCT 19 0.00 33.33 33.33 33.33 GCT 20 0.00 66.67 33.33 0.00 GCT 21 33.33 66.67 0.00 0.00 GCT 22 33.33 0.00 0.00 66.67 GCT 23 0.00 0.00 33.33 66.67 GCT 24 0.00 33.33 33.33 33.33 GCT 25 33.33 66.67 0.00 0.00 GCT 26 33.33 33.33 0.00 33.33 GCT 27 0.00 33.33 33.33 33.33 GCT 28 0.00 33.33 33.33 33.33 GCT 29 0.00 0.00 33.33 66.67 GCT 30 33.33 66.67 0.00 0.00 GCT 31 33.33 66.67 0.00 0.00 GCT 32 33.33 0.00 0.00 66.67 GCT 33 0.00 0.00 33.33 66.67 GCT 34 0.00 33.33 33.33 33.33 GCT 35 33.33 33.33 0.00 33.33 GCT 36 0.00 66.67 33.33 0.00 GCT 37 33.33 66.67 0.00 0.00 GCT 38 33.33 0.00 0.00 66.67 GCT 39 0.00 0.00 33.33 66.67 GCT 40 0.00 33.33 33.33 33.33 GCT 41 33.33 66.67 0.00 0.00 GCT 42 33.33 33.33 0.00 33.33 GCT 43 0.00 33.33 33.33 33.33 GCT 44 0.00 33.33 33.33 33.33 GCT 45 0.00 33.33 33.33 33.33 GCT 46 33.33 66.67 0.00 0.00 GCT 47 33.33 33.33 0.00 33.33 GCT 48 33.33 0.00 0.00 66.67 GCT 49 0.00 0.00 33.33 66.67 GCT 50 0.00 66.67 33.33 0.00 GCT 51 33.33 66.67 0.00 0.00 GCT 52 0.00 66.67 33.33 0.00 GCT 53 33.33 0.00 0.00 66.67 GCT 54 33.33 0.00 0.00 66.67 GCT 55 0.00 33.33 33.33 33.33 GCT 56 0.00 66.67 33.33 0.00 GCT 57 33.33 33.33 0.00 33.33 GCT 58 33.33 33.33 0.00 33.33 GCT 59 0.00 33.33 33.33 33.33 GCT 60 0.00 0.00 33.33 66.67 GCT 61 0.00 66.67 33.33 0.00 GCT 62 33.33 66.67 0.00 0.00 GCT 63 33.33 0.00 0.00 66.67 GCT 64 33.33 0.00 0.00 66.67 GCT 65 0.00 33.33 33.33 33.33 GCT 66 0.00 33.33 33.33 33.33 GCT 67 33.33 66.67 0.00 0.00 GCT 68 0.00 66.67 33.33 0.00 GCT 69 33.33 0.00 0.00 66.67 GCT 70 33.33 0.00 0.00 66.67 GCT 71 0.00 33.33 33.33 33.33 GCT 72 0.00 66.67 33.33 0.00 GCT 73 33.33 33.33 0.00 33.33 GCT 74 33.33 33.33 0.00 33.33 GCT 75 0.00 33.33 33.33 33.33 GCT 76 0.00 0.00 33.33 66.67 GCT 77 0.00 66.67 33.33 0.00 GCT 78 33.33 66.67 0.00 0.00 GCT 79 33.33 0.00 0.00 66.67 GCT 80 33.33 0.00 0.00 66.67 GCT 81 0.00 33.33 33.33 33.33 GCT 82 0.00 66.67 33.33 0.00 GCT 83 0.00 66.67 33.33 0.00 GCT 84 33.33 33.33 0.00 33.33 GCT 85 33.33 0.00 0.00 66.67 GCT 86 0.00 0.00 33.33 66.67 GCT 87 0.00 66.67 33.33 0.00 GCT 88 33.33 66.67 0.00 0.00 GCT 89 33.33 33.33 0.00 33.33 GCT 90 0.00 0.00 33.33 66.67 GCT 91 0.00 33.33 33.33 33.33 GCT 92 0.00 66.67 33.33 0.00 GCT 93 33.33 66.67 0.00 0.00 GCT 94 33.33 33.33 0.00 33.33 GCT 95 33.33 0.00 0.00 66.67 GCT 96 0.00 33.33 33.33 33.33 GCT 97 33.33 0.00 33.33 33.33 GCT 98 33.33 66.67 0.00 0.00 GCT 99 0.00 66.67 33.33 0.00 GCT 100 33.33 0.00 0.00 66.67 # ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] FBC 1 0.00 0.00 0.00 100.00 0.00 0.00 FBC 2 0.00 100.00 0.00 0.00 0.00 0.00 FBC 3 0.00 100.00 0.00 0.00 0.00 0.00 FBC 4 0.00 0.00 0.00 100.00 0.00 0.00 FBC 5 0.00 100.00 0.00 0.00 0.00 0.00 FBC 6 0.00 0.00 0.00 100.00 0.00 0.00 FBC 7 0.00 0.00 0.00 100.00 0.00 0.00 FBC 8 0.00 100.00 0.00 0.00 0.00 0.00 FBC 9 0.00 100.00 0.00 0.00 0.00 0.00 FBC 10 0.00 0.00 0.00 100.00 0.00 0.00 FBC 11 0.00 0.00 0.00 100.00 0.00 0.00 FBC 12 0.00 100.00 0.00 0.00 0.00 0.00 FBC 13 0.00 100.00 0.00 0.00 0.00 0.00 FBC 14 0.00 100.00 0.00 0.00 0.00 0.00 FBC 15 0.00 0.00 0.00 100.00 0.00 0.00 FBC 16 0.00 0.00 0.00 100.00 0.00 0.00 FBC 17 0.00 0.00 0.00 100.00 0.00 0.00 FBC 18 0.00 100.00 0.00 0.00 0.00 0.00 FBC 19 0.00 100.00 0.00 0.00 0.00 0.00 FBC 20 0.00 100.00 0.00 0.00 0.00 0.00 FBC 21 0.00 0.00 0.00 100.00 0.00 0.00 FBC 22 0.00 0.00 0.00 100.00 0.00 0.00 FBC 23 0.00 100.00 0.00 0.00 0.00 0.00 FBC 24 0.00 100.00 0.00 0.00 0.00 0.00 FBC 25 0.00 0.00 0.00 100.00 0.00 0.00 FBC 26 0.00 0.00 0.00 100.00 0.00 0.00 FBC 27 0.00 100.00 0.00 0.00 0.00 0.00 FBC 28 0.00 100.00 0.00 0.00 0.00 0.00 FBC 29 0.00 100.00 0.00 0.00 0.00 0.00 FBC 30 0.00 0.00 0.00 100.00 0.00 0.00 FBC 31 0.00 0.00 0.00 100.00 0.00 0.00 FBC 32 0.00 0.00 0.00 100.00 0.00 0.00 FBC 33 0.00 100.00 0.00 0.00 0.00 0.00 FBC 34 0.00 100.00 0.00 0.00 0.00 0.00 FBC 35 0.00 0.00 0.00 100.00 0.00 0.00 FBC 36 0.00 100.00 0.00 0.00 0.00 0.00 FBC 37 0.00 0.00 0.00 100.00 0.00 0.00 FBC 38 0.00 0.00 0.00 100.00 0.00 0.00 FBC 39 0.00 100.00 0.00 0.00 0.00 0.00 FBC 40 0.00 100.00 0.00 0.00 0.00 0.00 FBC 41 0.00 0.00 0.00 100.00 0.00 0.00 FBC 42 0.00 0.00 0.00 100.00 0.00 0.00 FBC 43 0.00 100.00 0.00 0.00 0.00 0.00 FBC 44 0.00 100.00 0.00 0.00 0.00 0.00 FBC 45 0.00 100.00 0.00 0.00 0.00 0.00 FBC 46 0.00 0.00 0.00 100.00 0.00 0.00 FBC 47 0.00 0.00 0.00 100.00 0.00 0.00 FBC 48 0.00 0.00 0.00 100.00 0.00 0.00 FBC 49 0.00 100.00 0.00 0.00 0.00 0.00 FBC 50 0.00 100.00 0.00 0.00 0.00 0.00 FBC 51 0.00 0.00 0.00 100.00 0.00 0.00 FBC 52 0.00 100.00 0.00 0.00 0.00 0.00 FBC 53 0.00 0.00 0.00 100.00 0.00 0.00 FBC 54 0.00 0.00 0.00 100.00 0.00 0.00 FBC 55 0.00 100.00 0.00 0.00 0.00 0.00 FBC 56 0.00 100.00 0.00 0.00 0.00 0.00 FBC 57 0.00 0.00 0.00 100.00 0.00 0.00 FBC 58 0.00 0.00 0.00 100.00 0.00 0.00 FBC 59 0.00 100.00 0.00 0.00 0.00 0.00 FBC 60 0.00 100.00 0.00 0.00 0.00 0.00 FBC 61 0.00 100.00 0.00 0.00 0.00 0.00 FBC 62 0.00 0.00 0.00 100.00 0.00 0.00 FBC 63 0.00 0.00 0.00 100.00 0.00 0.00 FBC 64 0.00 0.00 0.00 100.00 0.00 0.00 FBC 65 0.00 100.00 0.00 0.00 0.00 0.00 FBC 66 0.00 100.00 0.00 0.00 0.00 0.00 FBC 67 0.00 0.00 0.00 100.00 0.00 0.00 FBC 68 0.00 100.00 0.00 0.00 0.00 0.00 FBC 69 0.00 0.00 0.00 100.00 0.00 0.00 FBC 70 0.00 0.00 0.00 100.00 0.00 0.00 FBC 71 0.00 100.00 0.00 0.00 0.00 0.00 FBC 72 0.00 100.00 0.00 0.00 0.00 0.00 FBC 73 0.00 0.00 0.00 100.00 0.00 0.00 FBC 74 0.00 0.00 0.00 100.00 0.00 0.00 FBC 75 0.00 100.00 0.00 0.00 0.00 0.00 FBC 76 0.00 100.00 0.00 0.00 0.00 0.00 FBC 77 0.00 100.00 0.00 0.00 0.00 0.00 FBC 78 0.00 0.00 0.00 100.00 0.00 0.00 FBC 79 0.00 0.00 0.00 100.00 0.00 0.00 FBC 80 0.00 0.00 0.00 100.00 0.00 0.00 FBC 81 0.00 100.00 0.00 0.00 0.00 0.00 FBC 82 0.00 100.00 0.00 0.00 0.00 0.00 FBC 83 0.00 100.00 0.00 0.00 0.00 0.00 FBC 84 0.00 0.00 0.00 100.00 0.00 0.00 FBC 85 0.00 0.00 0.00 100.00 0.00 0.00 FBC 86 0.00 100.00 0.00 0.00 0.00 0.00 FBC 87 0.00 100.00 0.00 0.00 0.00 0.00 FBC 88 0.00 0.00 0.00 100.00 0.00 0.00 FBC 89 0.00 0.00 0.00 100.00 0.00 0.00 FBC 90 0.00 100.00 0.00 0.00 0.00 0.00 FBC 91 0.00 100.00 0.00 0.00 0.00 0.00 FBC 92 0.00 100.00 0.00 0.00 0.00 0.00 FBC 93 0.00 0.00 0.00 100.00 0.00 0.00 FBC 94 0.00 0.00 0.00 100.00 0.00 0.00 FBC 95 0.00 0.00 0.00 100.00 0.00 0.00 FBC 96 0.00 100.00 0.00 0.00 0.00 0.00 FBC 97 0.00 100.00 0.00 0.00 0.00 0.00 FBC 98 0.00 0.00 0.00 100.00 0.00 0.00 FBC 99 0.00 100.00 0.00 0.00 0.00 0.00 FBC 100 0.00 0.00 0.00 100.00 0.00 0.00 # ACGT raw counters for first fragments. Use `grep ^FTC | cut -f 2-` to extract this part. The columns are: A,C,G,T,N base counters FTC 0 51 0 49 0 # ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] LBC 1 0.00 0.00 0.00 100.00 0.00 0.00 LBC 2 0.00 50.00 0.00 50.00 0.00 0.00 LBC 3 0.00 50.00 0.00 50.00 0.00 0.00 LBC 4 0.00 100.00 0.00 0.00 0.00 0.00 LBC 5 0.00 100.00 0.00 0.00 0.00 0.00 LBC 6 0.00 0.00 0.00 100.00 0.00 0.00 LBC 7 0.00 0.00 0.00 100.00 0.00 0.00 LBC 8 0.00 50.00 0.00 50.00 0.00 0.00 LBC 9 0.00 100.00 0.00 0.00 0.00 0.00 LBC 10 0.00 50.00 0.00 50.00 0.00 0.00 LBC 11 0.00 50.00 0.00 50.00 0.00 0.00 LBC 12 0.00 50.00 0.00 50.00 0.00 0.00 LBC 13 0.00 0.00 0.00 100.00 0.00 0.00 LBC 14 0.00 100.00 0.00 0.00 0.00 0.00 LBC 15 0.00 100.00 0.00 0.00 0.00 0.00 LBC 16 0.00 0.00 0.00 100.00 0.00 0.00 LBC 17 0.00 0.00 0.00 100.00 0.00 0.00 LBC 18 0.00 50.00 0.00 50.00 0.00 0.00 LBC 19 0.00 50.00 0.00 50.00 0.00 0.00 LBC 20 0.00 100.00 0.00 0.00 0.00 0.00 LBC 21 0.00 100.00 0.00 0.00 0.00 0.00 LBC 22 0.00 0.00 0.00 100.00 0.00 0.00 LBC 23 0.00 0.00 0.00 100.00 0.00 0.00 LBC 24 0.00 50.00 0.00 50.00 0.00 0.00 LBC 25 0.00 100.00 0.00 0.00 0.00 0.00 LBC 26 0.00 50.00 0.00 50.00 0.00 0.00 LBC 27 0.00 50.00 0.00 50.00 0.00 0.00 LBC 28 0.00 50.00 0.00 50.00 0.00 0.00 LBC 29 0.00 0.00 0.00 100.00 0.00 0.00 LBC 30 0.00 100.00 0.00 0.00 0.00 0.00 LBC 31 0.00 100.00 0.00 0.00 0.00 0.00 LBC 32 0.00 0.00 0.00 100.00 0.00 0.00 LBC 33 0.00 0.00 0.00 100.00 0.00 0.00 LBC 34 0.00 50.00 0.00 50.00 0.00 0.00 LBC 35 0.00 50.00 0.00 50.00 0.00 0.00 LBC 36 0.00 100.00 0.00 0.00 0.00 0.00 LBC 37 0.00 100.00 0.00 0.00 0.00 0.00 LBC 38 0.00 0.00 0.00 100.00 0.00 0.00 LBC 39 0.00 0.00 0.00 100.00 0.00 0.00 LBC 40 0.00 50.00 0.00 50.00 0.00 0.00 LBC 41 0.00 100.00 0.00 0.00 0.00 0.00 LBC 42 0.00 50.00 0.00 50.00 0.00 0.00 LBC 43 0.00 50.00 0.00 50.00 0.00 0.00 LBC 44 0.00 50.00 0.00 50.00 0.00 0.00 LBC 45 0.00 50.00 0.00 50.00 0.00 0.00 LBC 46 0.00 100.00 0.00 0.00 0.00 0.00 LBC 47 0.00 50.00 0.00 50.00 0.00 0.00 LBC 48 0.00 0.00 0.00 100.00 0.00 0.00 LBC 49 0.00 0.00 0.00 100.00 0.00 0.00 LBC 50 0.00 100.00 0.00 0.00 0.00 0.00 LBC 51 0.00 100.00 0.00 0.00 0.00 0.00 LBC 52 0.00 100.00 0.00 0.00 0.00 0.00 LBC 53 0.00 0.00 0.00 100.00 0.00 0.00 LBC 54 0.00 0.00 0.00 100.00 0.00 0.00 LBC 55 0.00 50.00 0.00 50.00 0.00 0.00 LBC 56 0.00 100.00 0.00 0.00 0.00 0.00 LBC 57 0.00 50.00 0.00 50.00 0.00 0.00 LBC 58 0.00 50.00 0.00 50.00 0.00 0.00 LBC 59 0.00 50.00 0.00 50.00 0.00 0.00 LBC 60 0.00 0.00 0.00 100.00 0.00 0.00 LBC 61 0.00 100.00 0.00 0.00 0.00 0.00 LBC 62 0.00 100.00 0.00 0.00 0.00 0.00 LBC 63 0.00 0.00 0.00 100.00 0.00 0.00 LBC 64 0.00 0.00 0.00 100.00 0.00 0.00 LBC 65 0.00 50.00 0.00 50.00 0.00 0.00 LBC 66 0.00 50.00 0.00 50.00 0.00 0.00 LBC 67 0.00 100.00 0.00 0.00 0.00 0.00 LBC 68 0.00 100.00 0.00 0.00 0.00 0.00 LBC 69 0.00 0.00 0.00 100.00 0.00 0.00 LBC 70 0.00 0.00 0.00 100.00 0.00 0.00 LBC 71 0.00 50.00 0.00 50.00 0.00 0.00 LBC 72 0.00 100.00 0.00 0.00 0.00 0.00 LBC 73 0.00 50.00 0.00 50.00 0.00 0.00 LBC 74 0.00 50.00 0.00 50.00 0.00 0.00 LBC 75 0.00 50.00 0.00 50.00 0.00 0.00 LBC 76 0.00 0.00 0.00 100.00 0.00 0.00 LBC 77 0.00 100.00 0.00 0.00 0.00 0.00 LBC 78 0.00 100.00 0.00 0.00 0.00 0.00 LBC 79 0.00 0.00 0.00 100.00 0.00 0.00 LBC 80 0.00 0.00 0.00 100.00 0.00 0.00 LBC 81 0.00 50.00 0.00 50.00 0.00 0.00 LBC 82 0.00 100.00 0.00 0.00 0.00 0.00 LBC 83 0.00 100.00 0.00 0.00 0.00 0.00 LBC 84 0.00 50.00 0.00 50.00 0.00 0.00 LBC 85 0.00 0.00 0.00 100.00 0.00 0.00 LBC 86 0.00 0.00 0.00 100.00 0.00 0.00 LBC 87 0.00 100.00 0.00 0.00 0.00 0.00 LBC 88 0.00 100.00 0.00 0.00 0.00 0.00 LBC 89 0.00 50.00 0.00 50.00 0.00 0.00 LBC 90 0.00 0.00 0.00 100.00 0.00 0.00 LBC 91 0.00 50.00 0.00 50.00 0.00 0.00 LBC 92 0.00 100.00 0.00 0.00 0.00 0.00 LBC 93 0.00 100.00 0.00 0.00 0.00 0.00 LBC 94 0.00 50.00 0.00 50.00 0.00 0.00 LBC 95 0.00 0.00 0.00 100.00 0.00 0.00 LBC 96 0.00 50.00 0.00 50.00 0.00 0.00 LBC 97 50.00 0.00 0.00 50.00 0.00 0.00 LBC 98 0.00 100.00 0.00 0.00 0.00 0.00 LBC 99 0.00 100.00 0.00 0.00 0.00 0.00 LBC 100 0.00 0.00 0.00 100.00 0.00 0.00 # ACGT raw counters for last fragments. Use `grep ^LTC | cut -f 2-` to extract this part. The columns are: A,C,G,T,N base counters LTC 1 102 0 97 0 # ACGT content per cycle for barcodes. Use `grep ^BCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N counts as a percentage of all A/C/G/T bases [%] BCC1 2 0.00 0.00 100.00 0.00 0.00 BCC1 3 0.00 0.00 0.00 100.00 0.00 BCC1 4 0.00 100.00 0.00 0.00 0.00 BCC1 5 0.00 0.00 0.00 100.00 0.00 BCC1 6 100.00 0.00 0.00 0.00 0.00 BCC1 7 0.00 0.00 0.00 100.00 0.00 BCC1 8 0.00 100.00 0.00 0.00 0.00 # Barcode Qualities. Use `grep ^QTQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to barcode cycles. First column is the cycle number. QTQ1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 QTQ1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 QTQ1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 QTQ1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 QTQ1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 QTQ1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 QTQ1 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 QTQ1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 # Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs IS 0 0 0 0 0 IS 1 0 0 0 0 IS 2 0 0 0 0 IS 3 0 0 0 0 IS 4 0 0 0 0 IS 5 0 0 0 0 IS 6 0 0 0 0 IS 7 0 0 0 0 IS 8 0 0 0 0 IS 9 0 0 0 0 IS 10 0 0 0 0 IS 11 0 0 0 0 IS 12 0 0 0 0 IS 13 0 0 0 0 IS 14 0 0 0 0 IS 15 0 0 0 0 IS 16 0 0 0 0 IS 17 0 0 0 0 IS 18 0 0 0 0 IS 19 0 0 0 0 IS 20 0 0 0 0 IS 21 0 0 0 0 IS 22 0 0 0 0 IS 23 0 0 0 0 IS 24 0 0 0 0 IS 25 0 0 0 0 IS 26 0 0 0 0 IS 27 0 0 0 0 IS 28 0 0 0 0 IS 29 0 0 0 0 IS 30 0 0 0 0 IS 31 0 0 0 0 IS 32 0 0 0 0 IS 33 0 0 0 0 IS 34 0 0 0 0 IS 35 0 0 0 0 IS 36 0 0 0 0 IS 37 0 0 0 0 IS 38 0 0 0 0 IS 39 0 0 0 0 IS 40 0 0 0 0 IS 41 0 0 0 0 IS 42 0 0 0 0 IS 43 0 0 0 0 IS 44 0 0 0 0 IS 45 0 0 0 0 IS 46 0 0 0 0 IS 47 0 0 0 0 IS 48 0 0 0 0 IS 49 0 0 0 0 IS 50 0 0 0 0 IS 51 0 0 0 0 IS 52 0 0 0 0 IS 53 0 0 0 0 IS 54 0 0 0 0 IS 55 0 0 0 0 IS 56 0 0 0 0 IS 57 0 0 0 0 IS 58 0 0 0 0 IS 59 0 0 0 0 IS 60 0 0 0 0 IS 61 0 0 0 0 IS 62 0 0 0 0 IS 63 0 0 0 0 IS 64 0 0 0 0 IS 65 0 0 0 0 IS 66 0 0 0 0 IS 67 0 0 0 0 IS 68 0 0 0 0 IS 69 0 0 0 0 IS 70 0 0 0 0 IS 71 0 0 0 0 IS 72 0 0 0 0 IS 73 0 0 0 0 IS 74 0 0 0 0 IS 75 0 0 0 0 IS 76 0 0 0 0 IS 77 0 0 0 0 IS 78 0 0 0 0 IS 79 0 0 0 0 IS 80 0 0 0 0 IS 81 0 0 0 0 IS 82 0 0 0 0 IS 83 0 0 0 0 IS 84 0 0 0 0 IS 85 0 0 0 0 IS 86 0 0 0 0 IS 87 0 0 0 0 IS 88 0 0 0 0 IS 89 0 0 0 0 IS 90 0 0 0 0 IS 91 0 0 0 0 IS 92 0 0 0 0 IS 93 0 0 0 0 IS 94 0 0 0 0 IS 95 0 0 0 0 IS 96 0 0 0 0 IS 97 0 0 0 0 IS 98 0 0 0 0 IS 99 0 0 0 0 IS 100 0 0 0 0 IS 101 0 0 0 0 IS 102 0 0 0 0 IS 103 0 0 0 0 IS 104 0 0 0 0 IS 105 0 0 0 0 IS 106 0 0 0 0 IS 107 0 0 0 0 IS 108 0 0 0 0 IS 109 0 0 0 0 IS 110 0 0 0 0 IS 111 0 0 0 0 IS 112 0 0 0 0 IS 113 0 0 0 0 IS 114 0 0 0 0 IS 115 0 0 0 0 IS 116 0 0 0 0 IS 117 0 0 0 0 IS 118 0 0 0 0 IS 119 0 0 0 0 IS 120 0 0 0 0 IS 121 0 0 0 0 IS 122 0 0 0 0 IS 123 0 0 0 0 IS 124 0 0 0 0 IS 125 0 0 0 0 IS 126 0 0 0 0 IS 127 0 0 0 0 IS 128 0 0 0 0 IS 129 0 0 0 0 IS 130 0 0 0 0 IS 131 0 0 0 0 IS 132 0 0 0 0 IS 133 0 0 0 0 IS 134 0 0 0 0 IS 135 0 0 0 0 IS 136 0 0 0 0 IS 137 0 0 0 0 IS 138 0 0 0 0 IS 139 0 0 0 0 IS 140 0 0 0 0 IS 141 0 0 0 0 IS 142 0 0 0 0 IS 143 0 0 0 0 IS 144 0 0 0 0 IS 145 0 0 0 0 IS 146 0 0 0 0 IS 147 0 0 0 0 IS 148 0 0 0 0 IS 149 0 0 0 0 IS 150 0 0 0 0 IS 151 0 0 0 0 IS 152 0 0 0 0 IS 153 0 0 0 0 IS 154 0 0 0 0 IS 155 0 0 0 0 IS 156 0 0 0 0 IS 157 0 0 0 0 IS 158 0 0 0 0 IS 159 0 0 0 0 IS 160 0 0 0 0 IS 161 0 0 0 0 IS 162 0 0 0 0 IS 163 0 0 0 0 IS 164 0 0 0 0 IS 165 0 0 0 0 IS 166 0 0 0 0 IS 167 0 0 0 0 IS 168 0 0 0 0 IS 169 0 0 0 0 IS 170 0 0 0 0 IS 171 0 0 0 0 IS 172 0 0 0 0 IS 173 0 0 0 0 IS 174 0 0 0 0 IS 175 0 0 0 0 IS 176 0 0 0 0 IS 177 0 0 0 0 IS 178 0 0 0 0 IS 179 0 0 0 0 IS 180 1 1 0 0 # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count RL 100 3 # Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count FRL 100 1 # Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count LRL 100 2 # Mapping qualities for reads !(UNMAP|SECOND|SUPPL|QCFAIL|DUP). Use `grep ^MAPQ | cut -f 2-` to extract this part. The columns are: mapq, count MAPQ 37 1 MAPQ 60 2 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions ID 1 1 2 # Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev) IC 19 0 0 1 0 IC 92 0 0 1 0 IC 98 1 0 0 0 # Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part. COV [1-1] 1 79 COV [2-2] 2 100 # GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile GCD 0.0 100.000 0.000 0.000 0.000 0.000 0.000