annotate headWrapper.xml @ 3:b5af46a99f6e draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/show_beginning commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:27:35 -0500
parents f10412ed821f
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
f10412ed821f planemo upload commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
parents: 1
diff changeset
1 <tool id="Show beginning1" name="Select first" version="1.0.0">
0
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
2 <description>lines from a dataset</description>
1
618fbda86659 Added quotes and brackets to appropriate command arguments
greg <greg@bx.psu.edu>
parents: 0
diff changeset
3 <command interpreter="perl">headWrapper.pl "${input}" "${lineNum}" "${out_file1}"</command>
0
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
4 <inputs>
3
b5af46a99f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/show_beginning commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents: 2
diff changeset
5 <param name="lineNum" type="integer" value="10" label="Select first" help="lines"/>
0
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
6 <param format="txt" name="input" type="data" label="from"/>
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
7 </inputs>
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
8 <outputs>
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
9 <data format="input" name="out_file1" metadata_source="input"/>
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
10 </outputs>
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
11 <tests>
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
12 <test>
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
13 <param name="lineNum" value="10"/>
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
14 <param name="input" value="1.bed"/>
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
15 <output name="out_file1" file="eq-showbeginning.dat"/>
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
16 </test>
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
17 </tests>
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
18 <help>
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
19
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
20 **What it does**
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
21
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
22 This tool outputs specified number of lines from the **beginning** of a dataset
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
23
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
24 -----
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
25
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
26 **Example**
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
27
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
28 Selecting 2 lines from this::
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
29
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
30 chr7 56632 56652 D17003_CTCF_R6 310 +
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
31 chr7 56736 56756 D17003_CTCF_R7 354 +
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
32 chr7 56761 56781 D17003_CTCF_R4 220 +
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
33 chr7 56772 56792 D17003_CTCF_R7 372 +
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
34 chr7 56775 56795 D17003_CTCF_R4 207 +
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
35
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
36 will produce::
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
37
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
38 chr7 56632 56652 D17003_CTCF_R6 310 +
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
39 chr7 56736 56756 D17003_CTCF_R7 354 +
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
40
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
41 </help>
ecca14446e6a Uploaded show_beginning tarball.
devteam
parents:
diff changeset
42 </tool>