Mercurial > repos > devteam > table_annovar

annotate tool-data/annovar_index.loc.sample @ 2:9c75a9b5ecd2

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Add help to tool.
author jeremy goecks <jeremy.goecks@emory.edu>
date Mon, 27 Jan 2014 11:32:02 -0500
parents a6c64723f5ce
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1 #
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2 # Database name (value), dbkey, type, and path.
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3 #
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4 # Sample entries for gene-based annotations:
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5 #refGene hg19 gene_ann /aut/bx/jgoecks/galaxy/data/Homo_sapiens/UCSC/hg19/AnnovarIndices/
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6 #wgEncodeGencodeCompV14 hg19 gene_ann /aut/bx/jgoecks/galaxy/data/Homo_sapiens/UCSC/hg19/AnnovarIndices/
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7 #
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8 # Samples entries for region-based annotations:
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9 #
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10 #genomicSuperDups hg19 region /aut/bx/jgoecks/galaxy/data/Homo_sapiens/UCSC/hg19/AnnovarIndices/
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11 #phastConsElements46way hg19 region /aut/bx/jgoecks/galaxy/data/Homo_sapiens/UCSC/hg19/AnnovarIndices/
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12 #
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13 # Sample entries for filter-based annotations:
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14 #
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15 #1000g2012apr_all hg19 filter /aut/bx/jgoecks/galaxy/data/Homo_sapiens/UCSC/hg19/AnnovarIndices/
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16 #avsift hg19 filter /aut/bx/jgoecks/galaxy/data/Homo_sapiens/UCSC/hg19/AnnovarIndices/
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17 #snp137NonFlagged hg19 filter /aut/bx/jgoecks/galaxy/data/Homo_sapiens/UCSC/hg19/AnnovarIndices/
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18 #esp6500si_all hg19 filter /aut/bx/jgoecks/galaxy/data/Homo_sapiens/UCSC/hg19/AnnovarIndice/
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19 #snp137 hg19 filter /aut/bx/jgoecks/galaxy/data/Homo_sapiens/UCSC/hg19/AnnovarIndices/
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20 #cosmic64 hg19 filter /aut/bx/jgoecks/galaxy/data/Homo_sapiens/UCSC/hg19/AnnovarIndices/