Mercurial > repos > devteam > tophat_fusion_post

comparison tophat_fusion_post.xml @ 9:7d6658b2531a

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Uploaded
author devteam
date Thu, 20 Feb 2014 13:19:38 -0500
parents 052b357bb2b8
children 33aafd74bb31
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8:b5955d7050d7 9:7d6658b2531a
18 ln -s ${blast_db_path}/refGene.txt .; 18 ln -s ${blast_db_path}/refGene.txt .;
19 ln -s ${blast_db_path}/ensGene.txt .; 19 ln -s ${blast_db_path}/ensGene.txt .;
20 ln -s ${blast_db_path}/mcl .; 20 ln -s ${blast_db_path}/mcl .;
21 21
22 ## Run tophat-fusion-post 22 ## Run tophat-fusion-post
23 tophat-fusion-post -p 22 23 tophat-fusion-post -p \${GALAXY_SLOTS:-4}
24 --num-fusion-reads $num_fusion_reads --num-fusion-pairs $num_fusion_pairs --num-fusion-both $num_fusion_both --fusion-read-mismatches $fusion_read_mismatches --fusion-multireads $fusion_multireads 24 --num-fusion-reads $num_fusion_reads --num-fusion-pairs $num_fusion_pairs --num-fusion-both $num_fusion_both --fusion-read-mismatches $fusion_read_mismatches --fusion-multireads $fusion_multireads
25 #if str($is_human) == 'No': 25 #if str($is_human) == 'No':
26 --non-human 26 --non-human
27 #end if 27 #end if
28 28