Mercurial > repos > devteam > tophat_fusion_post

diff tophat_fusion_post.xml @ 9:7d6658b2531a

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author devteam
date Thu, 20 Feb 2014 13:19:38 -0500
parents 052b357bb2b8
children 33aafd74bb31
line wrap: on
line diff
--- a/tophat_fusion_post.xml	Tue Feb 11 11:31:33 2014 -0500
+++ b/tophat_fusion_post.xml	Thu Feb 20 13:19:38 2014 -0500
@@ -20,7 +20,7 @@
         ln -s ${blast_db_path}/mcl .;
 
         ## Run tophat-fusion-post
-        tophat-fusion-post -p 22
+        tophat-fusion-post -p \${GALAXY_SLOTS:-4}
         --num-fusion-reads $num_fusion_reads --num-fusion-pairs $num_fusion_pairs --num-fusion-both $num_fusion_both --fusion-read-mismatches $fusion_read_mismatches --fusion-multireads $fusion_multireads
         #if str($is_human) == 'No':
               --non-human