Mercurial > repos > devteam > tophat_fusion_post

diff tool_dependencies.xml @ 10:33aafd74bb31

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Fix bugs: (a) use value rather than dbkey to get bowtie indices and (b) point to correct bowtie table.
author devteam@galaxyproject.org
date Thu, 27 Feb 2014 14:58:22 -0500
parents b5955d7050d7
children f83394a2c2da
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Feb 20 13:19:38 2014 -0500
+++ b/tool_dependencies.xml	Thu Feb 27 14:58:22 2014 -0500
@@ -1,12 +1,12 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="blast+" version="2.2.28">
-        <repository changeset_revision="23b9ba41ad00" name="package_blast_plus_2_2_28" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository name="package_blast_plus_2_2_28" owner="iuc"/>
     </package>
     <package name="tophat2" version="2.0.9">
-        <repository changeset_revision="8549fd545473" name="package_tophat2_2_0_9" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository name="package_tophat2_2_0_9" owner="devteam"/>
     </package>
     <package name="bowtie" version="0.12.7">
-        <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository name="package_bowtie_0_12_7" owner="devteam"/>
     </package>
 </tool_dependency>