Mercurial > repos > devteam > vcf2tsv

annotate test-data/vcf2tsv-test1.tab @ 0:77e1141bbd29 draft

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author devteam
date Thu, 19 Mar 2015 11:35:32 -0400
parents
children 8fb92fcd20ae
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1 CHROM POS ID REF ALT QUAL FILTER AA AC AF AN DP NS DB H2 SAMPLE DP GQ GT HQ
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2 19 111 . A C 9.6 . . . . . . . 0 0 NA00001 . . 0|0 10,10
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3 19 111 . A C 9.6 . . . . . . . 0 0 NA00002 . . 0|0 10,10
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4 19 111 . A C 9.6 . . . . . . . 0 0 NA00003 . . 0/1 3,3
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5 19 112 . A G 10 . . . . . . . 0 0 NA00001 . . 0|0 10,10
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6 19 112 . A G 10 . . . . . . . 0 0 NA00002 . . 0|0 10,10
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7 19 112 . A G 10 . . . . . . . 0 0 NA00003 . . 0/1 3,3
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8 20 14370 rs6054257 G A 29 PASS . . 0.5 . 14 3 1 1 NA00001 1 48 0|0 51,51
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9 20 14370 rs6054257 G A 29 PASS . . 0.5 . 14 3 1 1 NA00002 8 48 1|0 51,51
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10 20 14370 rs6054257 G A 29 PASS . . 0.5 . 14 3 1 1 NA00003 5 43 1/1 .,.
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11 20 17330 . T A 3 q10 . . 0.017 . 11 3 0 0 NA00001 3 49 0|0 58,50
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12 20 17330 . T A 3 q10 . . 0.017 . 11 3 0 0 NA00002 5 3 0|1 65,3
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13 20 17330 . T A 3 q10 . . 0.017 . 11 3 0 0 NA00003 3 41 0/0 .,.
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14 20 1110696 rs6040355 A G,T 67 PASS T . 0.333,0.667 . 10 2 1 0 NA00001 6 21 1|2 23,27
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15 20 1110696 rs6040355 A G,T 67 PASS T . 0.333,0.667 . 10 2 1 0 NA00002 0 2 2|1 18,2
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16 20 1110696 rs6040355 A G,T 67 PASS T . 0.333,0.667 . 10 2 1 0 NA00003 4 35 2/2 .,.
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17 20 1230237 . T . 47 PASS T . . . 13 3 0 0 NA00001 . 54 0|0 56,60
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18 20 1230237 . T . 47 PASS T . . . 13 3 0 0 NA00002 4 48 0|0 51,51
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19 20 1230237 . T . 47 PASS T . . . 13 3 0 0 NA00003 2 61 0/0 .,.
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20 20 1234567 microsat1 G GA,GAC 50 PASS G 3,1 . 6 9 3 0 0 NA00001 4 . 0/1 .
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21 20 1234567 microsat1 G GA,GAC 50 PASS G 3,1 . 6 9 3 0 0 NA00002 2 17 0/2 .
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22 20 1234567 microsat1 G GA,GAC 50 PASS G 3,1 . 6 9 3 0 0 NA00003 3 40 1/1 .
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23 20 1235237 . T . 0 . . . . . . . 0 0 NA00001 . . 0/0 .
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24 20 1235237 . T . 0 . . . . . . . 0 0 NA00002 . . 0|0 .
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25 X 10 rsTest AC A,ATG 10 PASS . . . . . . 0 0 NA00001 . . 0 .
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26 X 10 rsTest AC A,ATG 10 PASS . . . . . . 0 0 NA00002 . . 0/1 .
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27 X 10 rsTest AC A,ATG 10 PASS . . . . . . 0 0 NA00003 . . 0|2 .