Mercurial > repos > devteam > vcf2tsv
annotate test-data/vcf2tsv-test1.tab @ 2:8fb92fcd20ae draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcf2tsv commit 0b9b6512272b82637c2f1e831367e89aed77ae79
author | devteam |
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date | Thu, 15 Sep 2016 16:06:22 -0400 |
parents | 77e1141bbd29 |
children | 285060661b45 |
rev | line source |
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0 | 1 CHROM POS ID REF ALT QUAL FILTER AA AC AF AN DP NS DB H2 SAMPLE DP GQ GT HQ |
2 19 111 . A C 9.6 . . . . . . . 0 0 NA00001 . . 0|0 10,10 | |
3 19 111 . A C 9.6 . . . . . . . 0 0 NA00002 . . 0|0 10,10 | |
4 19 111 . A C 9.6 . . . . . . . 0 0 NA00003 . . 0/1 3,3 | |
5 19 112 . A G 10 . . . . . . . 0 0 NA00001 . . 0|0 10,10 | |
6 19 112 . A G 10 . . . . . . . 0 0 NA00002 . . 0|0 10,10 | |
7 19 112 . A G 10 . . . . . . . 0 0 NA00003 . . 0/1 3,3 | |
8 20 14370 rs6054257 G A 29 PASS . . 0.5 . 14 3 1 1 NA00001 1 48 0|0 51,51 | |
9 20 14370 rs6054257 G A 29 PASS . . 0.5 . 14 3 1 1 NA00002 8 48 1|0 51,51 | |
10 20 14370 rs6054257 G A 29 PASS . . 0.5 . 14 3 1 1 NA00003 5 43 1/1 .,. | |
11 20 17330 . T A 3 q10 . . 0.017 . 11 3 0 0 NA00001 3 49 0|0 58,50 | |
12 20 17330 . T A 3 q10 . . 0.017 . 11 3 0 0 NA00002 5 3 0|1 65,3 | |
13 20 17330 . T A 3 q10 . . 0.017 . 11 3 0 0 NA00003 3 41 0/0 .,. | |
14 20 1110696 rs6040355 A G,T 67 PASS T . 0.333,0.667 . 10 2 1 0 NA00001 6 21 1|2 23,27 | |
15 20 1110696 rs6040355 A G,T 67 PASS T . 0.333,0.667 . 10 2 1 0 NA00002 0 2 2|1 18,2 | |
16 20 1110696 rs6040355 A G,T 67 PASS T . 0.333,0.667 . 10 2 1 0 NA00003 4 35 2/2 .,. | |
17 20 1230237 . T . 47 PASS T . . . 13 3 0 0 NA00001 . 54 0|0 56,60 | |
18 20 1230237 . T . 47 PASS T . . . 13 3 0 0 NA00002 4 48 0|0 51,51 | |
19 20 1230237 . T . 47 PASS T . . . 13 3 0 0 NA00003 2 61 0/0 .,. | |
20 20 1234567 microsat1 G GA,GAC 50 PASS G 3,1 . 6 9 3 0 0 NA00001 4 . 0/1 . | |
21 20 1234567 microsat1 G GA,GAC 50 PASS G 3,1 . 6 9 3 0 0 NA00002 2 17 0/2 . | |
22 20 1234567 microsat1 G GA,GAC 50 PASS G 3,1 . 6 9 3 0 0 NA00003 3 40 1/1 . | |
23 20 1235237 . T . 0 . . . . . . . 0 0 NA00001 . . 0/0 . | |
24 20 1235237 . T . 0 . . . . . . . 0 0 NA00002 . . 0|0 . | |
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8fb92fcd20ae
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcf2tsv commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
parents:
0
diff
changeset
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25 20 1235237 . T . 0 . . . . . . . 0 0 NA00003 . . ./. . |
0 | 26 X 10 rsTest AC A,ATG 10 PASS . . . . . . 0 0 NA00001 . . 0 . |
27 X 10 rsTest AC A,ATG 10 PASS . . . . . . 0 0 NA00002 . . 0/1 . | |
28 X 10 rsTest AC A,ATG 10 PASS . . . . . . 0 0 NA00003 . . 0|2 . |