Mercurial > repos > devteam > vcfaddinfo
diff vcfaddinfo.xml @ 0:4d4b16af67aa draft
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author | devteam |
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date | Thu, 19 Mar 2015 12:21:38 -0400 |
parents | |
children | 196ed76d2619 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/vcfaddinfo.xml Thu Mar 19 12:21:38 2015 -0400 @@ -0,0 +1,32 @@ +<tool id="vcfaddinfo" name="VCFaddinfo:" version="0.0.3"> + <description>Adds info fields from the second dataset which are not present in the first dataset</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"></expand> + <expand macro="stdio" /> + <command>vcfaddinfo "${input1}" "${input2}" > "${out_file1}"</command> + <inputs> + <param format="vcf" name="input1" type="data" label="Add INFO fields to" help="First VCF dataset"/> + <param format="vcf" name="input2" type="data" label="using INFO fields from" help="Second VCF dataset"/> + </inputs> + <outputs> + <data format="vcf" name="out_file1" /> + </outputs> + <tests> + <test> + <param name="input1" value="vcfaddinfo-input1.vcf"/> + <param name="input2" value="vcflib.vcf"/> + <output name="out_file1" file="vcfaddinfo-test1.vcf" /> + </test> + </tests> +<help> + +Adds info fields from the second dataset which are not present in the first dataset. + +----- + +Vcfaddinfo @IS_PART_OF_VCFLIB@ +</help> + <expand macro="citations" /> +</tool>