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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfgenotypes commit 36e9065027cc7bf721e9d203208477ee88906c57"
author iuc
date Thu, 23 Jan 2020 08:09:14 -0500
parents f5653ed90dfd
children
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<tool id="vcfgenotypes" name="VCFgenotypes:" version="@WRAPPER_VERSION@+galaxy0">
  <description>Convert numerical representation of genotypes to allelic</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <expand macro="stdio" />
  <command>vcfgenotypes '${vcf_input}' > '${out_file1}'</command>
  <inputs>
    <param format="vcf" name="vcf_input" type="data" label="Select VCF dataset"/>
  </inputs>
  <outputs>
    <data format="tabular" name="out_file1" />
  </outputs>
  <tests>
    <test>
      <param name="vcf_input" value="vcflib.vcf"/>
      <output name="out_file1" file="vcfgenotypes-test1.tab"/>
    </test>
    </tests>
  <help>

Converts numerical representation of genotypes (standard in GT field) to the alleles provided in the call's ALT/REF fields.

----

Vcfgenotypes @IS_PART_OF_VCFLIB@
</help>
  <expand macro="citations" />
</tool>