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comparison r_wrapper.sh @ 3:319fa5a9fc1b draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/xy_plot commit facdb350072c8492654c90040fea3109dc9b51cd
author devteam
date Wed, 07 Dec 2016 18:29:23 -0500
parents acf952549b53
children
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2:23657fcaaa5c 3:319fa5a9fc1b
1 #!/bin/sh 1 #!/bin/sh
2 2
3 ### Run R providing the R script in $1 as standard input and passing 3 ### Run R providing the R script in $1 as standard input and passing
4 ### the remaining arguments on the command line 4 ### the remaining arguments on the command line
5 5
6 # Function that writes a message to stderr and exits 6 # Function that writes a message to stderr and exits
7 function fail 7 function fail
8 { 8 {
9 echo "$@" >&2 9 echo "$@" >&2
10 exit 1 10 exit 1
11 } 11 }
12 12
13 # Ensure R executable is found 13 # Ensure R executable is found
14 which R > /dev/null || fail "'R' is required by this tool but was not found on path" 14 which R > /dev/null || fail "'R' is required by this tool but was not found on path"
15 15
16 # Extract first argument 16 # Extract first argument
17 infile=$1; shift 17 infile=$1; shift
18 18
19 # Ensure the file exists 19 # Ensure the file exists