view r_wrapper.sh @ 3:319fa5a9fc1b draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/xy_plot commit facdb350072c8492654c90040fea3109dc9b51cd
author devteam
date Wed, 07 Dec 2016 18:29:23 -0500
parents acf952549b53
children
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#!/bin/sh

### Run R providing the R script in $1 as standard input and passing
### the remaining arguments on the command line

# Function that writes a message to stderr and exits
function fail
{
    echo "$@" >&2
    exit 1
}

# Ensure R executable is found
which R > /dev/null || fail "'R' is required by this tool but was not found on path"

# Extract first argument
infile=$1; shift

# Ensure the file exists
test -f $infile || fail "R input file '$infile' does not exist"

# Invoke R passing file named by first argument to stdin
R --vanilla --slave $* < $infile