Mercurial > repos > devteam > xy_plot
comparison r_wrapper.sh @ 4:ecb437f1d298 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/xy_plot commit d792f43f02cd0d6ab74411c21e0897937cb075aa
| author | devteam |
|---|---|
| date | Sun, 17 Dec 2017 12:37:44 -0500 |
| parents | 319fa5a9fc1b |
| children |
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| 3:319fa5a9fc1b | 4:ecb437f1d298 |
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| 1 #!/bin/sh | |
| 2 | |
| 3 ### Run R providing the R script in $1 as standard input and passing | |
| 4 ### the remaining arguments on the command line | |
| 5 | |
| 6 # Function that writes a message to stderr and exits | |
| 7 function fail | |
| 8 { | |
| 9 echo "$@" >&2 | |
| 10 exit 1 | |
| 11 } | |
| 12 | |
| 13 # Ensure R executable is found | |
| 14 which R > /dev/null || fail "'R' is required by this tool but was not found on path" | |
| 15 | |
| 16 # Extract first argument | |
| 17 infile=$1; shift | |
| 18 | |
| 19 # Ensure the file exists | |
| 20 test -f $infile || fail "R input file '$infile' does not exist" | |
| 21 | |
| 22 # Invoke R passing file named by first argument to stdin | |
| 23 R --vanilla --slave $* < $infile |