view r_wrapper.sh @ 2:23657fcaaa5c draft

planemo upload commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
author devteam
date Fri, 09 Oct 2015 15:50:24 -0400
parents acf952549b53
children 319fa5a9fc1b
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#!/bin/sh

### Run R providing the R script in $1 as standard input and passing 
### the remaining arguments on the command line

# Function that writes a message to stderr and exits
function fail
{
    echo "$@" >&2
    exit 1
}

# Ensure R executable is found
which R > /dev/null || fail "'R' is required by this tool but was not found on path" 

# Extract first argument
infile=$1; shift

# Ensure the file exists
test -f $infile || fail "R input file '$infile' does not exist"

# Invoke R passing file named by first argument to stdin
R --vanilla --slave $* < $infile