Mercurial > repos > dfornika > data_manager_build_kraken2_database

view data_manager_conf.xml @ 2:cf0cda80b659 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
author dfornika
date Thu, 28 Feb 2019 18:18:01 -0500
parents 7e43f66abe9d
children b03007bc0f05
line wrap: on
line source

<data_managers>
    <data_manager tool_file="data_manager/kraken2_custom_database_builder.xml" id="kraken2_custom_database_builder" version="1.0">
	<data_table name="kraken2_databases">
	    <output>
		<column name="value"/>
		<column name="name"/>
		<column name="path" output_ref="out_file">
		    <move type="directory" relativize_symlinks="True">
			<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target>
		    </move>
		    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation>
		    <value_translation type="function">abspath</value_translation>
		</column>
	    </output>
	</data_table>
    </data_manager>
    <data_manager tool_file="data_manager/kraken2_standard_database_builder.xml" id="kraken2_standard_database_builder" version="1.0">
	<data_table name="kraken2_databases">
	    <output>
		<column name="value"/>
		<column name="name"/>
		<column name="path" output_ref="out_file">
		    <move type="directory" relativize_symlinks="True">
			<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target>
		    </move>
		    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation>
		    <value_translation type="function">abspath</value_translation>
		</column>
	    </output>
	</data_table>
    </data_manager>
    <data_manager tool_file="data_manager/kraken2_build_standard.xml" id="kraken2_build_standard" version="1.0">
	<data_table name="kraken2_databases">
	    <output>
		<column name="value"/>
		<column name="name"/>
		<column name="path" output_ref="out_file">
		    <move type="directory" relativize_symlinks="True">
			<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target>
		    </move>
		    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation>
		    <value_translation type="function">abspath</value_translation>
		</column>
	    </output>
	</data_table>
    </data_manager>
</data_managers>