Mercurial > repos > dfornika > kraken2

changeset 10:a74785cdf5e3 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/kraken2 commit 593a4002db3f2513974809a94db514c05fa589f6-dirty
author dfornika
date Mon, 04 Mar 2019 17:25:29 -0500
parents a811afe91eab
children da1a2d98dab1
files kraken2.xml macros.xml
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/kraken2.xml	Mon Mar 04 17:21:42 2019 -0500
+++ b/kraken2.xml	Mon Mar 04 17:25:29 2019 -0500
@@ -57,7 +57,7 @@
             <param name="split_reads" value="false"/>
             <param name="quick" value="no"/>
             <param name="only-classified-output" value="false"/>
-            <param name="kraken_database" value="new_style_test_entry"/>
+            <param name="kraken2_database" value="new_style_test_entry"/>
             <output name="output" file="kraken_test1_output.tab" ftype="tabular"/>
         </test>
     </tests>
--- a/macros.xml	Mon Mar 04 17:21:42 2019 -0500
+++ b/macros.xml	Mon Mar 04 17:25:29 2019 -0500
@@ -15,5 +15,5 @@
             <citation type="doi">10.1186/gb-2014-15-3-r46</citation>
         </citations>
     </xml>
-    <token name="@SET_DATABASE_PATH@">if [ -d '${kraken2_database.fields.path}/${kraken2_database.fields.name}' ]; then export KRAKEN2_DB_PATH='${kraken_database.fields.path}/${kraken_database.fields.name}'; else export KRAKEN2_DB_PATH='${kraken_database.fields.path}'; fi</token>
+    <token name="@SET_DATABASE_PATH@">if [ -d '${kraken2_database.fields.path}/${kraken2_database.fields.name}' ]; then export KRAKEN2_DB_PATH='${kraken2_database.fields.path}/${kraken2_database.fields.name}'; else export KRAKEN2_DB_PATH='${kraken2_database.fields.path}'; fi</token>
 </macros>