Mercurial > repos > dfornika > mentalist

annotate data_managers/data_manager_conf.xml @ 5:2c742bf44180 draft

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planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit e25241b08d12362f7cbd988ef1b67b8b01e0031e-dirty
author dfornika
date Thu, 24 May 2018 18:07:56 -0400
parents af77acce864b
children f29e7738bb64
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1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
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1 <?xml version="1.0"?>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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2 <data_managers>
4
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3 <data_manager tool_file="data_manager_mentalist_build_db/data_manager/mentalist_build_db.xml" id="mentalist_build_db" version="0.1.8">
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4 <data_table name="mentalist_databases">
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5 <output>
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6 <column name="value" />
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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7 <column name="name" />
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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8 <column name="path" output_ref="out_file">
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9 <move type="directory" relativize_symlinks="True">
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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11 </move>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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13 <value_translation type="function">abspath</value_translation>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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14 </column>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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15 </output>
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16 </data_table>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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17 </data_manager>
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18 <data_manager tool_file="data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.xml" id="mentalist_download_cgmlst" version="0.1.8">
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19 <data_table name="mentalist_databases">
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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20 <output>
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21 <column name="value" />
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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22 <column name="name" />
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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23 <column name="path" output_ref="out_file">
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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24 <move type="directory" relativize_symlinks="True">
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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25 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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26 </move>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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27 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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28 <value_translation type="function">abspath</value_translation>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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29 </column>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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30 </output>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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31 </data_table>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
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32 </data_manager>
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af77acce864b planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit f8c92831eef76c170c55da87b82697cb44118de8-dirty
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33 <data_manager tool_file="data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.xml" id="mentalist_download_pubmlst" version="0.1.8">
1
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
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34 <data_table name="mentalist_databases">
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35 <output>
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36 <column name="value" />
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37 <column name="name" />
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38 <column name="path" output_ref="out_file">
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
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39 <move type="directory" relativize_symlinks="True">
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
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40 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
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41 </move>
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42 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
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43 <value_translation type="function">abspath</value_translation>
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44 </column>
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
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45 </output>
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
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46 </data_table>
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
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47 </data_manager>
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48 <data_manager tool_file="data_manager_mentalist_download_enterobase/data_manager/mentalist_download_enterobase.xml" id="mentalist_download_enterobase" version="0.1.8">
0
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49 <data_table name="mentalist_databases">
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50 <output>
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51 <column name="value" />
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52 <column name="name" />
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53 <column name="path" output_ref="out_file">
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54 <move type="directory" relativize_symlinks="True">
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55 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
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56 </move>
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57 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
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58 <value_translation type="function">abspath</value_translation>
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59 </column>
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60 </output>
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61 </data_table>
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62 </data_manager>
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63 </data_managers>