Mercurial > repos > dktanwar > test1
comparison 02_read_counts_tss/countsAroundTSS.xml @ 0:071d2d36c828 draft default tip
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| author | dktanwar |
|---|---|
| date | Tue, 12 Sep 2017 14:14:32 -0400 |
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| -1:000000000000 | 0:071d2d36c828 |
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| 1 <tool id="countsAroundTSS" name="None" version="0.1.0"> | |
| 2 <requirements> | |
| 3 </requirements> | |
| 4 <command detect_errors="exit_code"><![CDATA[ | |
| 5 Rscript countsAroundTSS.R --input $bam --input $genome --input $up_stream --input $downstream --input $TxDb --output $output | |
| 6 ]]></command> | |
| 7 <inputs> | |
| 8 <param type="data" name="bam" format="" /> | |
| 9 <param type="data" name="genome" type="character" /> | |
| 10 <param type="data" name="up_stream" type="integer" /> | |
| 11 <param type="data" name="downstream" type="integer" /> | |
| 12 <param type="data" name="TxDb" optional="true" format="sqlite" /> | |
| 13 </inputs> | |
| 14 <outputs> | |
| 15 <data name="ENCFF027UTM" format="txt" /> | |
| 16 </outputs> | |
| 17 <help><![CDATA[ | |
| 18 TODO: Fill in help. | |
| 19 ]]></help> | |
| 20 <citations> | |
| 21 <citation type="bibtex"> | |
| 22 @misc{renameTODO, | |
| 23 author = {LastTODO, FirstTODO}, | |
| 24 year = {TODO}, | |
| 25 title = {TODO}, | |
| 26 url = {https://www.cyberciti.biz/faq/list-the-contents-of-a-tar-or-targz-file/}, | |
| 27 }</citation> | |
| 28 </citations> | |
| 29 </tool> |