--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/02_read_counts_tss/countsAroundTSS.xml	Tue Sep 12 14:14:32 2017 -0400
@@ -0,0 +1,29 @@
+<tool id="countsAroundTSS" name="None" version="0.1.0">
+    <requirements>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        Rscript countsAroundTSS.R --input $bam --input $genome --input $up_stream --input $downstream --input $TxDb --output $output 
+    ]]></command>
+    <inputs>
+        <param type="data" name="bam" format="" />
+        <param type="data" name="genome" type="character" />
+        <param type="data" name="up_stream" type="integer" />
+        <param type="data" name="downstream" type="integer" />
+        <param type="data" name="TxDb" optional="true" format="sqlite" />
+    </inputs>
+    <outputs>
+        <data name="ENCFF027UTM" format="txt" />
+    </outputs>
+    <help><![CDATA[
+        TODO: Fill in help.
+    ]]></help>
+    <citations>
+        <citation type="bibtex">
+@misc{renameTODO,
+  author = {LastTODO, FirstTODO},
+  year = {TODO},
+  title = {TODO},
+  url = {https://www.cyberciti.biz/faq/list-the-contents-of-a-tar-or-targz-file/},
+}</citation>
+    </citations>
+</tool>