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1 <tool id="GSEA" name="Gene Set Enrichment Analysis" version="0.1.0">
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2 <command detect_errors="exit_code"><![CDATA[
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3 Rscript $__tool_directory__/GSEA.R --input1 $Ranked_list --input2 $Pathway_database --output $output
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4 ]]></command>
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5 <inputs>
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6 <param type="data" name="Ranked_list" format="txt" />
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7 <param type="data" name="Pathway_database" format="txt" />
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8 </inputs>
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9 <outputs>
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10 <data name="output" format="txt" />
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11 </outputs>
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12 <tests>
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13 <test>
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14 <param name="Ranked_list" value="ranked_genes_list.rnk"/>
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15 <param name="Pathway_database" value="ouse.gmt"/>
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16 <output name="output" file="GSEA_results.txt"/>
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17 </test>
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18 </tests>
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19 <help><![CDATA[
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20 Write the tool help section here.
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21 ]]></help>
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22 <citations>
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23 <citation type="bibtex">
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24 @misc{github01_mismatch_removal,
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25 author = {LastTODO, FirstTODO},
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26 year = {TODO},
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27 title = {01_mismatch_removal},
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28 publisher = {GitHub},
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29 journal = {GitHub repository},
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30 url = {https://github.com/dktanwar/Galaxy_Tools/tree/master/01_mismatch_removal},
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31 }</citation>
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32 </citations>
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33 </tool>
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