Mercurial > repos > dktanwar > test_fgsea

changeset 3:afbb19a68290 draft

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Deleted selected files
author dktanwar
date Mon, 11 Dec 2017 09:48:00 -0500
parents d91ddc13f8a8
children e4e1f98e82d8
files 16_fgsea/GSEA.xml 16_fgsea/GSEA.xml~
diffstat 2 files changed, 0 insertions(+), 66 deletions(-) [+]
line wrap: on
line diff
--- a/16_fgsea/GSEA.xml	Mon Dec 11 09:43:17 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,33 +0,0 @@
-<tool id="GSEA" name="Gene Set Enrichment Analysis" version="0.1.0">
-  <command detect_errors="exit_code"><![CDATA[
-        RScript $__tool_directory__/GSEA.R --input1 $Ranked_list --input2 $Pathway_database --output $output
-    ]]></command>
-  <inputs>
-    <param type="data" name="Ranked_list" format="txt" />
-    <param type="data" name="Pathway_database" format="txt" />
-  </inputs>
-  <outputs>
-    <data name="output" format="txt" />
-  </outputs>
-  <tests>
-    <test>
-      <param name="Ranked_list" value="ranked_genes_list.rnk"/>
-      <param name="Pathway_database" value="ouse.gmt"/>
-      <output name="output" file="GSEA_results.txt"/>
-    </test>
-  </tests>
-  <help><![CDATA[
-        Write the tool help section here.
-    ]]></help>
-  <citations>
-    <citation type="bibtex">
-      @misc{github01_mismatch_removal,
-      author = {LastTODO, FirstTODO},
-      year = {TODO},
-      title = {01_mismatch_removal},
-      publisher = {GitHub},
-      journal = {GitHub repository},
-      url = {https://github.com/dktanwar/Galaxy_Tools/tree/master/01_mismatch_removal},
-      }</citation>
-  </citations>
-</tool>
--- a/16_fgsea/GSEA.xml~	Mon Dec 11 09:43:17 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,33 +0,0 @@
-<tool id="GSEA" name="Gene Set Enrichment Analysis" version="0.1.0">
-  <command detect_errors="exit_code"><![CDATA[
-        RScript $__tool_directory__/GSEA.R --input1 $Ranked_list --input2 $Pathway_database --output $output
-    ]]></command>
-  <inputs>
-    <param type="data" name="Ranked_list" format="txt" />
-    <param type="data" name="Pathway_database" format="txt" />
-  </inputs>
-  <outputs>
-    <data name="Results" format="txt" />
-  </outputs>
-  <tests>
-    <test>
-      <param name="Ranked_list" value="ranked_genes_list.rnk"/>
-      <param name="Pathway_database" value="ouse.gmt"/>
-      <output name="output" file="GSEA_results.txt"/>
-    </test>
-  </tests>
-  <help><![CDATA[
-        Write the tool help section here.
-    ]]></help>
-  <citations>
-    <citation type="bibtex">
-      @misc{github01_mismatch_removal,
-      author = {LastTODO, FirstTODO},
-      year = {TODO},
-      title = {01_mismatch_removal},
-      publisher = {GitHub},
-      journal = {GitHub repository},
-      url = {https://github.com/dktanwar/Galaxy_Tools/tree/master/01_mismatch_removal},
-      }</citation>
-  </citations>
-</tool>